Miyakogusa Predicted Gene
- Lj3g3v0718210.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0718210.1 tr|C1EEL0|C1EEL0_MICSR Predicted protein
OS=Micromonas sp. (strain RCC299 / NOUM17)
GN=MICPUN_103168,31.46,0.00000000000002,seg,NULL; MYB_LIKE,Myb-like
domain; HTH_MYB,Myb domain; SUBFAMILY NOT NAMED,NULL; MYB-LIKE
DNA-BINDI,CUFF.41152.1
(379 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G41020.1 | Symbols: | myb family transcription factor | chr5... 268 5e-72
AT4G32730.1 | Symbols: PC-MYB1, MYB3R-1, ATMYB3R-1, ATMYB3R1, MY... 49 5e-06
AT4G32730.2 | Symbols: PC-MYB1, MYB3R-1, ATMYB3R-1, ATMYB3R1 | H... 49 5e-06
>AT5G41020.1 | Symbols: | myb family transcription factor |
chr5:16425883-16427649 REVERSE LENGTH=588
Length = 588
Score = 268 bits (685), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 128/255 (50%), Positives = 171/255 (67%), Gaps = 14/255 (5%)
Query: 137 TSKPKRVTFSDQVEVCGDDG-------------LVRGKRFTPEEDEKIKEAVCDYIKSHG 183
++ KRV FSDQVE D +VRGKRFT EEDE +K AV +YI +H
Sbjct: 269 STSSKRVKFSDQVEFFPSDDDEGTEDDDEEEVKVVRGKRFTKEEDEMVKNAVLEYIDNHA 328
Query: 184 LGDEGLNMILYCISHPEVRGCWKEIGAALPHRPHQSVYYRAHIIFERDEGRKWTPEELDF 243
LGDEG+ M++ C ++P+++GCWKEI +ALP R + SVY+RAH IFE WT E+++
Sbjct: 329 LGDEGIKMVMECKAYPQLKGCWKEITSALPWRTYNSVYHRAHTIFEAGSQGIWTKEDIEL 388
Query: 244 LLKAQDQHGSDWKLIAEGLNKHRLHVKDTWRRIRRTNANKGRWSQDEHQRLFDLVNKDLC 303
+++ Q HG+DWK +A+ + KHR HVKD WRR R KG W ++E+Q LFDLVNKDL
Sbjct: 389 VMEFQKTHGNDWKTLADAMGKHRKHVKDAWRRGRLAGKKKGHWMREEYQNLFDLVNKDLR 448
Query: 304 ARAAEDCRKTKHGMLRDNVSWEAISDEFGTRAIALCCMKWYQQLTSPMVADGIWSDSDDY 363
+A ++ + +KHGML+DN+ W AISD TR CC KWY+QL SPMVA G+W++ DDY
Sbjct: 449 MKAFKE-KHSKHGMLKDNIPWMAISDVLETRDHVTCCQKWYEQLISPMVAKGMWANVDDY 507
Query: 364 RLLNALYALDACSME 378
RLL L LDA ++
Sbjct: 508 RLLEELLKLDAACID 522
>AT4G32730.1 | Symbols: PC-MYB1, MYB3R-1, ATMYB3R-1, ATMYB3R1,
MYB3R1 | Homeodomain-like protein |
chr4:15791039-15794252 FORWARD LENGTH=776
Length = 776
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 23/137 (16%)
Query: 235 KWTPEELDFLLKAQDQ-HGSDWKLIAEGLNKHRLHVK--DTWRRIRRTNANKGRWSQDEH 291
+WTPEE + L KA ++ G +WK IAE K R V+ W+++ KG WS++E
Sbjct: 37 QWTPEEDEVLCKAVERFQGKNWKKIAECF-KDRTDVQCLHRWQKVLNPELVKGPWSKEED 95
Query: 292 QRLFDLVNKDLCARAAEDCRKTKHGMLRDNVSWEAISDEFGTRAIALCCMKWYQQLTSPM 351
+ DLV K+G + W IS R C +W+ L +P
Sbjct: 96 NTIIDLVE--------------KYGPKK----WSTISQHLPGRIGKQCRERWHNHL-NPG 136
Query: 352 VADGIWSDSDDYRLLNA 368
+ W+ ++ L+ A
Sbjct: 137 INKNAWTQEEELTLIRA 153
>AT4G32730.2 | Symbols: PC-MYB1, MYB3R-1, ATMYB3R-1, ATMYB3R1 |
Homeodomain-like protein | chr4:15791039-15795643
FORWARD LENGTH=995
Length = 995
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 23/137 (16%)
Query: 235 KWTPEELDFLLKAQDQ-HGSDWKLIAEGLNKHRLHVK--DTWRRIRRTNANKGRWSQDEH 291
+WTPEE + L KA ++ G +WK IAE K R V+ W+++ KG WS++E
Sbjct: 37 QWTPEEDEVLCKAVERFQGKNWKKIAECF-KDRTDVQCLHRWQKVLNPELVKGPWSKEED 95
Query: 292 QRLFDLVNKDLCARAAEDCRKTKHGMLRDNVSWEAISDEFGTRAIALCCMKWYQQLTSPM 351
+ DLV K+G + W IS R C +W+ L +P
Sbjct: 96 NTIIDLVE--------------KYGPKK----WSTISQHLPGRIGKQCRERWHNHL-NPG 136
Query: 352 VADGIWSDSDDYRLLNA 368
+ W+ ++ L+ A
Sbjct: 137 INKNAWTQEEELTLIRA 153