Miyakogusa Predicted Gene
- Lj3g3v0707070.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0707070.1 tr|B9HJ19|B9HJ19_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_873811 PE=4
SV=1,69.49,0.000000000000001,UBA,Ubiquitin-associated/translation
elongation factor EF1B, N-terminal; XPC-binding,XPC-binding
dom,gene.g45859.t1.1
(387 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G02540.1 | Symbols: RAD23-3, RAD23C | Rad23 UV excision repai... 382 e-106
AT3G02540.3 | Symbols: RAD23C | Rad23 UV excision repair protein... 382 e-106
AT5G38470.1 | Symbols: RAD23D | Rad23 UV excision repair protein... 364 e-101
AT1G79650.4 | Symbols: RAD23B | Rad23 UV excision repair protein... 340 1e-93
AT1G79650.1 | Symbols: RAD23, RAD23B | Rad23 UV excision repair ... 323 1e-88
AT1G79650.2 | Symbols: RAD23, RAD23B | Rad23 UV excision repair ... 288 6e-78
AT1G16190.1 | Symbols: RAD23A | Rad23 UV excision repair protein... 285 3e-77
AT1G79650.3 | Symbols: RAD23, RAD23B | Rad23 UV excision repair ... 274 6e-74
AT5G38470.2 | Symbols: RAD23D | Rad23 UV excision repair protein... 256 2e-68
AT3G02540.2 | Symbols: RAD23-3, RAD23C | Rad23 UV excision repai... 177 1e-44
AT5G16090.1 | Symbols: | INVOLVED IN: nucleotide-excision repai... 82 5e-16
>AT3G02540.1 | Symbols: RAD23-3, RAD23C | Rad23 UV excision repair
protein family | chr3:533095-536151 REVERSE LENGTH=419
Length = 419
Score = 382 bits (982), Expect = e-106, Method: Compositional matrix adjust.
Identities = 191/252 (75%), Positives = 207/252 (82%), Gaps = 5/252 (1%)
Query: 139 SVSDVYGEAASNLVAGSNLAGMIQQILDMGGGSWDRDTVVRALRAAFNNPERAVDYLYSG 198
S DVYG+AASNL AGSNL IQQILDMGGG+WDR+TVV ALRAAFNNPERAV+YLY+G
Sbjct: 169 SQGDVYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTG 228
Query: 199 IPEQAEAPPVTQMXXXX-XXXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPNVGSGPAGA 257
IPEQAE PPV + +SGPNANPLDLFPQGLPNVG P GA
Sbjct: 229 IPEQAEVPPVARPPASAGQPANPPAQTQQPAAAPASGPNANPLDLFPQGLPNVGGNP-GA 287
Query: 258 GSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQDHQVDFLRLINEPVE 317
G+LDFLRNSQQFQALRAMVQANPQ+LQPMLQELGKQNP+LMRLIQDHQ DFLRLINEPVE
Sbjct: 288 GTLDFLRNSQQFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEPVE 347
Query: 318 GG--EGNILGQL-AGAAMPQAVSVTPEEREAIERLEAMGFDRATVLEVYFACNKNEELAA 374
GG GN+LGQ+ AG PQA+ VT EEREAIERLEAMGF+RA VLEV+FACNKNEELAA
Sbjct: 348 GGGESGNLLGQMAAGMPQPQAIQVTHEEREAIERLEAMGFERALVLEVFFACNKNEELAA 407
Query: 375 NYLLDHMHEFDE 386
NYLLDHMHEF+E
Sbjct: 408 NYLLDHMHEFEE 419
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/59 (79%), Positives = 55/59 (93%)
Query: 8 EMEVSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTSLEENKVAENSFIVIMLSKTK 66
E V +VKKNIE+VQGADVYPAA+QMLIHQGKVLKD T++EENKVAENSFIVIM++K+K
Sbjct: 20 EDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIEENKVAENSFIVIMMNKSK 78
>AT3G02540.3 | Symbols: RAD23C | Rad23 UV excision repair protein
family | chr3:533095-536151 REVERSE LENGTH=418
Length = 418
Score = 382 bits (981), Expect = e-106, Method: Compositional matrix adjust.
Identities = 190/249 (76%), Positives = 206/249 (82%), Gaps = 5/249 (2%)
Query: 142 DVYGEAASNLVAGSNLAGMIQQILDMGGGSWDRDTVVRALRAAFNNPERAVDYLYSGIPE 201
DVYG+AASNL AGSNL IQQILDMGGG+WDR+TVV ALRAAFNNPERAV+YLY+GIPE
Sbjct: 171 DVYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPE 230
Query: 202 QAEAPPVTQMXXXX-XXXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPNVGSGPAGAGSL 260
QAE PPV + +SGPNANPLDLFPQGLPNVG P GAG+L
Sbjct: 231 QAEVPPVARPPASAGQPANPPAQTQQPAAAPASGPNANPLDLFPQGLPNVGGNP-GAGTL 289
Query: 261 DFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQDHQVDFLRLINEPVEGG- 319
DFLRNSQQFQALRAMVQANPQ+LQPMLQELGKQNP+LMRLIQDHQ DFLRLINEPVEGG
Sbjct: 290 DFLRNSQQFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEPVEGGG 349
Query: 320 -EGNILGQL-AGAAMPQAVSVTPEEREAIERLEAMGFDRATVLEVYFACNKNEELAANYL 377
GN+LGQ+ AG PQA+ VT EEREAIERLEAMGF+RA VLEV+FACNKNEELAANYL
Sbjct: 350 ESGNLLGQMAAGMPQPQAIQVTHEEREAIERLEAMGFERALVLEVFFACNKNEELAANYL 409
Query: 378 LDHMHEFDE 386
LDHMHEF+E
Sbjct: 410 LDHMHEFEE 418
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/59 (79%), Positives = 55/59 (93%)
Query: 8 EMEVSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTSLEENKVAENSFIVIMLSKTK 66
E V +VKKNIE+VQGADVYPAA+QMLIHQGKVLKD T++EENKVAENSFIVIM++K+K
Sbjct: 20 EDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIEENKVAENSFIVIMMNKSK 78
>AT5G38470.1 | Symbols: RAD23D | Rad23 UV excision repair protein
family | chr5:15404720-15407500 FORWARD LENGTH=378
Length = 378
Score = 364 bits (934), Expect = e-101, Method: Compositional matrix adjust.
Identities = 187/250 (74%), Positives = 205/250 (82%), Gaps = 6/250 (2%)
Query: 141 SDVYGEAASNLVAGSNLAGMIQQILDMGGGSWDRDTVVRALRAAFNNPERAVDYLYSGIP 200
+DVYG+AASNLVAG+ L +QQILDMGGGSWDRDTVVRALRAAFNNPERAV+YLYSGIP
Sbjct: 132 TDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIP 191
Query: 201 EQAEAPPVTQMXXXXXXXX---XXXXXXXXXXXXSSGPNANPLDLFPQGLPNVGSGPAGA 257
QAE PPV Q + GPNANPL+LFPQG+P +G AGA
Sbjct: 192 AQAEIPPVAQAPATGEQAANPLAQPQQAAAPAAATGGPNANPLNLFPQGMPAADAG-AGA 250
Query: 258 GSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQDHQVDFLRLINEPVE 317
G+LDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNP L+RLIQ+HQ DFLRLINEPVE
Sbjct: 251 GNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVE 310
Query: 318 GGEGNILGQLAGAAMPQAVSVTPEEREAIERLEAMGFDRATVLEVYFACNKNEELAANYL 377
GE N++ QL AAMPQAV+VTPEEREAIERLE MGFDRA VLEV+FACNKNEELAANYL
Sbjct: 311 -GEENVMEQLE-AAMPQAVTVTPEEREAIERLEGMGFDRAMVLEVFFACNKNEELAANYL 368
Query: 378 LDHMHEFDEQ 387
LDHMHEF++Q
Sbjct: 369 LDHMHEFEDQ 378
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/70 (71%), Positives = 60/70 (85%), Gaps = 2/70 (2%)
Query: 10 EVSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTSLEENKVAENSFIVIMLSKTKSSS 69
+VS+VK IETV+GA+ YPAA+QMLIHQGKVLKD T+LEEN V ENSFIVIMLSKTK+S
Sbjct: 22 KVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLEENNVVENSFIVIMLSKTKASP 80
Query: 70 GEGCTTSTAP 79
G +T++AP
Sbjct: 81 S-GASTASAP 89
>AT1G79650.4 | Symbols: RAD23B | Rad23 UV excision repair protein
family | chr1:29972406-29975132 REVERSE LENGTH=395
Length = 395
Score = 340 bits (871), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 189/380 (49%), Positives = 240/380 (63%), Gaps = 17/380 (4%)
Query: 14 VKKNIETVQGADVYPAAQQMLIHQGKVLKDGTSLEENKVAENSFIVIMLSKTKSSSGEG- 72
VKKNIE QG D YP QQ+LIH GKVLKD TSL ENKV E F+V+MLSK+KS G
Sbjct: 26 VKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFLVVMLSKSKSGGSAGQ 85
Query: 73 CTTSTAPLAEXXXXXXXXXXXXXXXXXXXXXXXRDMXXXXXXXXXXXXXXXXXXXXXXXI 132
+ T+ +++ +
Sbjct: 86 ASVQTSSVSQPVSATTSSTKPAAPSTTQSSPVPASPIPAQEQPAVYAFVFSFAGLAFCPL 145
Query: 133 SSGSAVSV--SDVYGEAASNLVAGSNLAGMIQQILDMGGGSWDRDTVVRALRAAFNNPER 190
VS+ +D YG+AAS LV+GS+L M+QQI++MGGGSWD++TV RALRAA+NNPER
Sbjct: 146 YGFPKVSMAQTDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPER 205
Query: 191 AVDYLYSGIPEQAE-APPVTQMXXXXXXXXXXXXXXXXXXXXSSGPNANPLDLFPQ-GLP 248
AVDYLYSGIP+ AE A PV + S GPN++PLDLFPQ +
Sbjct: 206 AVDYLYSGIPQTAEVAVPVPE-------AQIAGSGAAPVAPASGGPNSSPLDLFPQETVA 258
Query: 249 NVGSGPAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQDHQVDF 308
GSG G+L+FLRN+ QFQ LR MV +NPQILQPMLQELGKQNP L+RLIQ++Q +F
Sbjct: 259 AAGSG--DLGTLEFLRNNDQFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEF 316
Query: 309 LRLINEPVEG--GEGNILGQLAGAAMPQAVSVTPEEREAIERLEAMGFDRATVLEVYFAC 366
L+L+NEP EG GEG++ Q MP A++VTP E+EAI+RLEAMGFDRA V+E + AC
Sbjct: 317 LQLVNEPYEGSDGEGDMFDQ-PEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLAC 375
Query: 367 NKNEELAANYLLDHMHEFDE 386
++NEELAANYLL++ +F++
Sbjct: 376 DRNEELAANYLLENSGDFED 395
>AT1G79650.1 | Symbols: RAD23, RAD23B | Rad23 UV excision repair
protein family | chr1:29972406-29975132 REVERSE
LENGTH=371
Length = 371
Score = 323 bits (828), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 181/378 (47%), Positives = 232/378 (61%), Gaps = 37/378 (9%)
Query: 14 VKKNIETVQGADVYPAAQQMLIHQGKVLKDGTSLEENKVAENSF-IVIMLSKTKSSSGEG 72
VKKNIE QG D YP QQ+LIH GKVLKD TSL ENKV E F +V++ S
Sbjct: 26 VKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFLVVMLSKSKSGGSAGQ 85
Query: 73 CTTSTAPLAEXXXXXXXXXXXXXXXXXXXXXXXRDMXXXXXXXXXXXXXXXXXXXXXXXI 132
+ T+ +++
Sbjct: 86 ASVQTSSVSQPVSATTSSTKPAAPSTTQSSPVP----------------------ASPIP 123
Query: 133 SSGSAVSVSDVYGEAASNLVAGSNLAGMIQQILDMGGGSWDRDTVVRALRAAFNNPERAV 192
+ + +D YG+AAS LV+GS+L M+QQI++MGGGSWD++TV RALRAA+NNPERAV
Sbjct: 124 AQEQPAAQTDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAV 183
Query: 193 DYLYSGIPEQAE-APPVTQMXXXXXXXXXXXXXXXXXXXXSSGPNANPLDLFPQ-GLPNV 250
DYLYSGIP+ AE A PV + S GPN++PLDLFPQ +
Sbjct: 184 DYLYSGIPQTAEVAVPVPE-------AQIAGSGAAPVAPASGGPNSSPLDLFPQETVAAA 236
Query: 251 GSGPAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQDHQVDFLR 310
GSG G+L+FLRN+ QFQ LR MV +NPQILQPMLQELGKQNP L+RLIQ++Q +FL+
Sbjct: 237 GSG--DLGTLEFLRNNDQFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQ 294
Query: 311 LINEPVEG--GEGNILGQLAGAAMPQAVSVTPEEREAIERLEAMGFDRATVLEVYFACNK 368
L+NEP EG GEG++ Q MP A++VTP E+EAI+RLEAMGFDRA V+E + AC++
Sbjct: 295 LVNEPYEGSDGEGDMFDQ-PEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDR 353
Query: 369 NEELAANYLLDHMHEFDE 386
NEELAANYLL++ +F++
Sbjct: 354 NEELAANYLLENSGDFED 371
>AT1G79650.2 | Symbols: RAD23, RAD23B | Rad23 UV excision repair
protein family | chr1:29972406-29975132 REVERSE
LENGTH=365
Length = 365
Score = 288 bits (736), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 147/250 (58%), Positives = 187/250 (74%), Gaps = 14/250 (5%)
Query: 141 SDVYGEAASNLVAGSNLAGMIQQILDMGGGSWDRDTVVRALRAAFNNPERAVDYLYSGIP 200
+D YG+AAS LV+GS+L M+QQI++MGGGSWD++TV RALRAA+NNPERAVDYLYSGIP
Sbjct: 126 TDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIP 185
Query: 201 EQAE-APPVTQMXXXXXXXXXXXXXXXXXXXXSSGPNANPLDLFPQ-GLPNVGSGPAGAG 258
+ AE A PV + S GPN++PLDLFPQ + GSG G
Sbjct: 186 QTAEVAVPVPE-------AQIAGSGAAPVAPASGGPNSSPLDLFPQETVAAAGSG--DLG 236
Query: 259 SLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQDHQVDFLRLINEPVEG 318
+L+FLRN+ QFQ LR MV +NPQILQPMLQELGKQNP L+RLIQ++Q +FL+L+NEP EG
Sbjct: 237 TLEFLRNNDQFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEG 296
Query: 319 --GEGNILGQLAGAAMPQAVSVTPEEREAIERLEAMGFDRATVLEVYFACNKNEELAANY 376
GEG++ Q MP A++VTP E+EAI+RLEAMGFDRA V+E + AC++NEELAANY
Sbjct: 297 SDGEGDMFDQ-PEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANY 355
Query: 377 LLDHMHEFDE 386
LL++ +F++
Sbjct: 356 LLENSGDFED 365
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 49/77 (63%), Gaps = 9/77 (11%)
Query: 14 VKKNIETVQGADVYPAAQQMLIHQGKVLKDGTSLEENKVAENSFIVIMLSKTKSSSGEG- 72
VKKNIE QG D YP QQ+LIH GKVLKD TSL ENKV E F+V+MLSK+KS G
Sbjct: 26 VKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFLVVMLSKSKSGGSAGQ 85
Query: 73 --------CTTSTAPLA 81
T+ST P A
Sbjct: 86 ASVQPVSATTSSTKPAA 102
>AT1G16190.1 | Symbols: RAD23A | Rad23 UV excision repair protein
family | chr1:5543267-5545892 FORWARD LENGTH=368
Length = 368
Score = 285 bits (730), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 139/247 (56%), Positives = 181/247 (73%), Gaps = 9/247 (3%)
Query: 141 SDVYGEAASNLVAGSNLAGMIQQILDMGGGSWDRDTVVRALRAAFNNPERAVDYLYSGIP 200
SD YG+AAS LV+GS++ M+QQI++MGGGSWD++TV RALRAA+NNPERAVDYLYSGIP
Sbjct: 130 SDTYGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIP 189
Query: 201 EQAEAPPVTQMXXXXXXXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPNVGSGPAGAGSL 260
E P S GPN++PLDLFPQ + +G G+L
Sbjct: 190 ETVTIPATN-------LSGVGSGRELTAPPPSGGPNSSPLDLFPQEAVSDAAG-GDLGTL 241
Query: 261 DFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQDHQVDFLRLINEPVEGGE 320
+FLR + QFQ LR+MV +NPQILQPMLQELGKQNP L+RLIQ++Q +FL+L+NEP EG +
Sbjct: 242 EFLRGNDQFQQLRSMVNSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLLNEPYEGSD 301
Query: 321 GNI-LGQLAGAAMPQAVSVTPEEREAIERLEAMGFDRATVLEVYFACNKNEELAANYLLD 379
G++ + MP +V+VTPEE+E+IERLEAMGFDRA V+E + +C++NEELAANYLL+
Sbjct: 302 GDVDIFDQPDQEMPHSVNVTPEEQESIERLEAMGFDRAIVIEAFLSCDRNEELAANYLLE 361
Query: 380 HMHEFDE 386
H +F++
Sbjct: 362 HSADFED 368
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 37/59 (62%), Positives = 44/59 (74%)
Query: 14 VKKNIETVQGADVYPAAQQMLIHQGKVLKDGTSLEENKVAENSFIVIMLSKTKSSSGEG 72
VKKNIE Q D YP QQ+LIH GKVLKD T+L ENKV E F+V+MLSK+K++S G
Sbjct: 26 VKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLVENKVTEEGFLVVMLSKSKTASSAG 84
>AT1G79650.3 | Symbols: RAD23, RAD23B | Rad23 UV excision repair
protein family | chr1:29972406-29975132 REVERSE
LENGTH=351
Length = 351
Score = 274 bits (701), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 164/378 (43%), Positives = 214/378 (56%), Gaps = 57/378 (15%)
Query: 14 VKKNIETVQGADVYPAAQQMLIHQGKVLKDGTSLEENKVA-ENSFIVIMLSKTKSSSGEG 72
VKKNIE QG D YP QQ+LIH GKVLKD TSL ENKV E +V++ S
Sbjct: 26 VKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFLVVMLSKSKSGGSAGQ 85
Query: 73 CTTSTAPLAEXXXXXXXXXXXXXXXXXXXXXXXRDMXXXXXXXXXXXXXXXXXXXXXXXI 132
+ T+ +++
Sbjct: 86 ASVQTSSVSQPVSATTSSTKPAAPSTTQSSPVP----------------------ASPIP 123
Query: 133 SSGSAVSVSDVYGEAASNLVAGSNLAGMIQQILDMGGGSWDRDTVVRALRAAFNNPERAV 192
+ + +D YG+AAS LV+GS+L M+QQI++MGGGSWD++TV RALRAA+NNPERAV
Sbjct: 124 AQEQPAAQTDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAV 183
Query: 193 DYLYSGIPEQAE-APPVTQMXXXXXXXXXXXXXXXXXXXXSSGPNANPLDLFPQ-GLPNV 250
DYLYSGIP+ AE A PV + S GPN++PLDLFPQ +
Sbjct: 184 DYLYSGIPQTAEVAVPVPE-------AQIAGSGAAPVAPASGGPNSSPLDLFPQETVAAA 236
Query: 251 GSGPAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQDHQVDFLR 310
GSG G+L+FLRN+ QELGKQNP L+RLIQ++Q +FL+
Sbjct: 237 GSG--DLGTLEFLRNND--------------------QELGKQNPQLLRLIQENQAEFLQ 274
Query: 311 LINEPVEG--GEGNILGQLAGAAMPQAVSVTPEEREAIERLEAMGFDRATVLEVYFACNK 368
L+NEP EG GEG++ Q MP A++VTP E+EAI+RLEAMGFDRA V+E + AC++
Sbjct: 275 LVNEPYEGSDGEGDMFDQ-PEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDR 333
Query: 369 NEELAANYLLDHMHEFDE 386
NEELAANYLL++ +F++
Sbjct: 334 NEELAANYLLENSGDFED 351
>AT5G38470.2 | Symbols: RAD23D | Rad23 UV excision repair protein
family | chr5:15404720-15407251 FORWARD LENGTH=332
Length = 332
Score = 256 bits (654), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 133/190 (70%), Positives = 146/190 (76%), Gaps = 4/190 (2%)
Query: 141 SDVYGEAASNLVAGSNLAGMIQQILDMGGGSWDRDTVVRALRAAFNNPERAVDYLYSGIP 200
+DVYG+AASNLVAG+ L +QQILDMGGGSWDRDTVVRALRAAFNNPERAV+YLYSGIP
Sbjct: 132 TDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIP 191
Query: 201 EQAEAPPVTQMXXX---XXXXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPNVGSGPAGA 257
QAE PPV Q + GPNANPL+LFPQG+P +G AGA
Sbjct: 192 AQAEIPPVAQAPATGEQAANPLAQPQQAAAPAAATGGPNANPLNLFPQGMPAADAG-AGA 250
Query: 258 GSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQDHQVDFLRLINEPVE 317
G+LDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNP L+RLIQ+HQ DFLRLINEPVE
Sbjct: 251 GNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVE 310
Query: 318 GGEGNILGQL 327
G E G +
Sbjct: 311 GEEWECYGTV 320
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/70 (71%), Positives = 60/70 (85%), Gaps = 2/70 (2%)
Query: 10 EVSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTSLEENKVAENSFIVIMLSKTKSSS 69
+VS+VK IETV+GA+ YPAA+QMLIHQGKVLKD T+LEEN V ENSFIVIMLSKTK+S
Sbjct: 22 KVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLEENNVVENSFIVIMLSKTKASP 80
Query: 70 GEGCTTSTAP 79
G +T++AP
Sbjct: 81 S-GASTASAP 89
>AT3G02540.2 | Symbols: RAD23-3, RAD23C | Rad23 UV excision repair
protein family | chr3:533906-536151 REVERSE LENGTH=299
Length = 299
Score = 177 bits (448), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 88/128 (68%), Positives = 96/128 (75%), Gaps = 2/128 (1%)
Query: 142 DVYGEAASNLVAGSNLAGMIQQILDMGGGSWDRDTVVRALRAAFNNPERAVDYLYSGIPE 201
DVYG+AASNL AGSNL IQQILDMGGG+WDR+TVV ALRAAFNNPERAV+YLY+GIPE
Sbjct: 172 DVYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPE 231
Query: 202 QAEAPPVTQMXXXX-XXXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPNVGSGPAGAGSL 260
QAE PPV + +SGPNANPLDLFPQGLPNVG P GAG+L
Sbjct: 232 QAEVPPVARPPASAGQPANPPAQTQQPAAAPASGPNANPLDLFPQGLPNVGGNP-GAGTL 290
Query: 261 DFLRNSQQ 268
DFLRNSQQ
Sbjct: 291 DFLRNSQQ 298
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/59 (79%), Positives = 55/59 (93%)
Query: 8 EMEVSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTSLEENKVAENSFIVIMLSKTK 66
E V +VKKNIE+VQGADVYPAA+QMLIHQGKVLKD T++EENKVAENSFIVIM++K+K
Sbjct: 20 EDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIEENKVAENSFIVIMMNKSK 78
>AT5G16090.1 | Symbols: | INVOLVED IN: nucleotide-excision repair;
LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s:
Ubiquitin-associated/translation elongation factor EF1B,
N-terminal, eukaryote (InterPro:IPR015940),
Ubiquitin-associated/translation elongation factor EF1B,
N-terminal (InterPro:IPR000449), UV excision repair
protein Rad23 (InterPro:IPR004806), Ubiquitin
(InterPro:IPR000626), Ubiquitin supergroup
(InterPro:IPR019955), UBA-like (InterPro:IPR009060);
BEST Arabidopsis thaliana protein match is: Rad23 UV
excision repair protein family (TAIR:AT3G02540.1); Has
1311 Blast hits to 954 proteins in 240 species: Archae -
0; Bacteria - 0; Metazoa - 634; Fungi - 179; Plants -
321; Viruses - 27; Other Eukaryotes - 150 (source: NCBI
BLink). | chr5:5255797-5257230 REVERSE LENGTH=171
Length = 171
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 67/102 (65%), Gaps = 5/102 (4%)
Query: 282 ILQPMLQELGKQNPHLMRLIQDHQVDFLRLINEPVEGGE-GNILGQLAGAAMPQAVSVTP 340
I + L+E+ KQNP L ++I+ + F+ ++N+ E E N L Q + + VT
Sbjct: 74 ITKGCLEEMEKQNPPLFQMIRHNSAGFVPVLNK--ESFERDNELAQPEEDLL--QLQVTA 129
Query: 341 EEREAIERLEAMGFDRATVLEVYFACNKNEELAANYLLDHMH 382
+ EAI RLEAMGF+R VLEV+ ACNKNE+LAAN+LLDH+H
Sbjct: 130 VDDEAINRLEAMGFERRVVLEVFLACNKNEQLAANFLLDHIH 171
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 43/54 (79%)
Query: 11 VSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTSLEENKVAENSFIVIMLSK 64
V+EVKKNIETV GA YPAAQQ+LIH+ + L+D T++E NKV + S I I+++K
Sbjct: 23 VAEVKKNIETVMGASEYPAAQQILIHKREKLRDETTMEANKVFDKSVIAIIITK 76