Miyakogusa Predicted Gene

Lj3g3v0697060.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0697060.1 Non Chatacterized Hit- tr|I1I1W4|I1I1W4_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,68.42,0.000000000000004,Histone-fold,Histone-fold; no
description,Histone-fold; seg,NULL; CBFD_NFYB_HMF,Transcription
factor,CUFF.41141.1
         (126 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G63470.2 | Symbols: NF-YC4 | nuclear factor Y, subunit C4 | c...   111   1e-25
AT5G63470.1 | Symbols: NF-YC4 | nuclear factor Y, subunit C4 | c...   111   1e-25
AT3G48590.1 | Symbols: HAP5A, ATHAP5A, NF-YC1 | nuclear factor Y...   111   1e-25
AT1G54830.3 | Symbols: NF-YC3 | nuclear factor Y, subunit C3 | c...   110   2e-25
AT1G54830.1 | Symbols: NF-YC3 | nuclear factor Y, subunit C3 | c...   110   2e-25
AT1G54830.2 | Symbols: NF-YC3 | nuclear factor Y, subunit C3 | c...   110   2e-25
AT1G56170.2 | Symbols: HAP5B, ATHAP5B, NF-YC2 | nuclear factor Y...   110   3e-25
AT1G56170.1 | Symbols: HAP5B, ATHAP5B, NF-YC2 | nuclear factor Y...   110   3e-25
AT1G08970.2 | Symbols: HAP5C, NF-YC9 | nuclear factor Y, subunit...   109   4e-25
AT1G08970.3 | Symbols: HAP5C, NF-YC9 | nuclear factor Y, subunit...   109   4e-25
AT1G08970.1 | Symbols: HAP5C, NF-YC9 | nuclear factor Y, subunit...   109   4e-25
AT1G08970.4 | Symbols: HAP5C, NF-YC9 | nuclear factor Y, subunit...   109   4e-25
AT5G50480.1 | Symbols: NF-YC6 | nuclear factor Y, subunit C6 | c...    94   2e-20
AT5G27910.1 | Symbols: NF-YC8 | nuclear factor Y, subunit C8 | c...    88   2e-18
AT5G50490.1 | Symbols: NF-YC5 | nuclear factor Y, subunit C5 | c...    78   2e-15
AT5G50470.1 | Symbols: NF-YC7 | nuclear factor Y, subunit C7 | c...    72   1e-13
AT5G38140.1 | Symbols: NF-YC12 | nuclear factor Y, subunit C12 |...    72   1e-13
AT5G19490.1 | Symbols:  | Histone superfamily protein | chr5:657...    48   2e-06
AT3G12480.1 | Symbols: NF-YC11 | nuclear factor Y, subunit C11 |...    48   2e-06

>AT5G63470.2 | Symbols: NF-YC4 | nuclear factor Y, subunit C4 |
           chr5:25416332-25417084 REVERSE LENGTH=250
          Length = 250

 Score =  111 bits (278), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 51/79 (64%), Positives = 66/79 (83%), Gaps = 1/79 (1%)

Query: 22  HSLPLARIKKIMKKSGEDVKMISGESPIIFSKACEIFIEELTRRSWIMAMQGKRRTLHKD 81
           H LPLARIKKIMK + EDV+MIS E+PI+F+KACE+FI ELT RSW+ A + KRRTL K+
Sbjct: 77  HQLPLARIKKIMK-ADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKN 135

Query: 82  DVASAVIATDVFDFLITLV 100
           D+A+A+  TD+FDFL+ +V
Sbjct: 136 DIAAAITRTDIFDFLVDIV 154


>AT5G63470.1 | Symbols: NF-YC4 | nuclear factor Y, subunit C4 |
           chr5:25416037-25417084 REVERSE LENGTH=250
          Length = 250

 Score =  111 bits (278), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 51/79 (64%), Positives = 66/79 (83%), Gaps = 1/79 (1%)

Query: 22  HSLPLARIKKIMKKSGEDVKMISGESPIIFSKACEIFIEELTRRSWIMAMQGKRRTLHKD 81
           H LPLARIKKIMK + EDV+MIS E+PI+F+KACE+FI ELT RSW+ A + KRRTL K+
Sbjct: 77  HQLPLARIKKIMK-ADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKN 135

Query: 82  DVASAVIATDVFDFLITLV 100
           D+A+A+  TD+FDFL+ +V
Sbjct: 136 DIAAAITRTDIFDFLVDIV 154


>AT3G48590.1 | Symbols: HAP5A, ATHAP5A, NF-YC1 | nuclear factor Y,
           subunit C1 | chr3:18008893-18009938 REVERSE LENGTH=234
          Length = 234

 Score =  111 bits (277), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 51/79 (64%), Positives = 66/79 (83%), Gaps = 1/79 (1%)

Query: 22  HSLPLARIKKIMKKSGEDVKMISGESPIIFSKACEIFIEELTRRSWIMAMQGKRRTLHKD 81
           H LPLARIKKIMK + EDV+MIS E+PI+F+KACE+FI ELT RSW+ A + KRRTL K+
Sbjct: 64  HQLPLARIKKIMK-ADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKN 122

Query: 82  DVASAVIATDVFDFLITLV 100
           D+A+A+  TD+FDFL+ +V
Sbjct: 123 DIAAAITRTDIFDFLVDIV 141


>AT1G54830.3 | Symbols: NF-YC3 | nuclear factor Y, subunit C3 |
           chr1:20451672-20452325 FORWARD LENGTH=217
          Length = 217

 Score =  110 bits (276), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 50/79 (63%), Positives = 65/79 (82%), Gaps = 1/79 (1%)

Query: 22  HSLPLARIKKIMKKSGEDVKMISGESPIIFSKACEIFIEELTRRSWIMAMQGKRRTLHKD 81
           HSLPLARIKKIMK + EDV+MIS E+P++F++ACE+FI ELT RSW    + KRRTL K+
Sbjct: 69  HSLPLARIKKIMK-ADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKN 127

Query: 82  DVASAVIATDVFDFLITLV 100
           D+A+AV  TD+FDFL+ +V
Sbjct: 128 DIAAAVTRTDIFDFLVDIV 146


>AT1G54830.1 | Symbols: NF-YC3 | nuclear factor Y, subunit C3 |
           chr1:20451672-20452325 FORWARD LENGTH=217
          Length = 217

 Score =  110 bits (276), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 50/79 (63%), Positives = 65/79 (82%), Gaps = 1/79 (1%)

Query: 22  HSLPLARIKKIMKKSGEDVKMISGESPIIFSKACEIFIEELTRRSWIMAMQGKRRTLHKD 81
           HSLPLARIKKIMK + EDV+MIS E+P++F++ACE+FI ELT RSW    + KRRTL K+
Sbjct: 69  HSLPLARIKKIMK-ADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKN 127

Query: 82  DVASAVIATDVFDFLITLV 100
           D+A+AV  TD+FDFL+ +V
Sbjct: 128 DIAAAVTRTDIFDFLVDIV 146


>AT1G54830.2 | Symbols: NF-YC3 | nuclear factor Y, subunit C3 |
           chr1:20451672-20452325 FORWARD LENGTH=217
          Length = 217

 Score =  110 bits (276), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 50/79 (63%), Positives = 65/79 (82%), Gaps = 1/79 (1%)

Query: 22  HSLPLARIKKIMKKSGEDVKMISGESPIIFSKACEIFIEELTRRSWIMAMQGKRRTLHKD 81
           HSLPLARIKKIMK + EDV+MIS E+P++F++ACE+FI ELT RSW    + KRRTL K+
Sbjct: 69  HSLPLARIKKIMK-ADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKN 127

Query: 82  DVASAVIATDVFDFLITLV 100
           D+A+AV  TD+FDFL+ +V
Sbjct: 128 DIAAAVTRTDIFDFLVDIV 146


>AT1G56170.2 | Symbols: HAP5B, ATHAP5B, NF-YC2 | nuclear factor Y,
           subunit C2 | chr1:21025118-21025717 FORWARD LENGTH=199
          Length = 199

 Score =  110 bits (274), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 50/79 (63%), Positives = 66/79 (83%), Gaps = 1/79 (1%)

Query: 22  HSLPLARIKKIMKKSGEDVKMISGESPIIFSKACEIFIEELTRRSWIMAMQGKRRTLHKD 81
           H+LPLARIKKIMK + EDV+MIS E+P+IF+KACE+FI ELT R+WI   + KRRTL K+
Sbjct: 75  HTLPLARIKKIMK-ADEDVRMISAEAPVIFAKACEMFILELTLRAWIHTEENKRRTLQKN 133

Query: 82  DVASAVIATDVFDFLITLV 100
           D+A+A+  TDVFDFL+ ++
Sbjct: 134 DIAAAISRTDVFDFLVDII 152


>AT1G56170.1 | Symbols: HAP5B, ATHAP5B, NF-YC2 | nuclear factor Y,
           subunit C2 | chr1:21025118-21025717 FORWARD LENGTH=199
          Length = 199

 Score =  110 bits (274), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 50/79 (63%), Positives = 66/79 (83%), Gaps = 1/79 (1%)

Query: 22  HSLPLARIKKIMKKSGEDVKMISGESPIIFSKACEIFIEELTRRSWIMAMQGKRRTLHKD 81
           H+LPLARIKKIMK + EDV+MIS E+P+IF+KACE+FI ELT R+WI   + KRRTL K+
Sbjct: 75  HTLPLARIKKIMK-ADEDVRMISAEAPVIFAKACEMFILELTLRAWIHTEENKRRTLQKN 133

Query: 82  DVASAVIATDVFDFLITLV 100
           D+A+A+  TDVFDFL+ ++
Sbjct: 134 DIAAAISRTDVFDFLVDII 152


>AT1G08970.2 | Symbols: HAP5C, NF-YC9 | nuclear factor Y, subunit C9
           | chr1:2883144-2883839 FORWARD LENGTH=231
          Length = 231

 Score =  109 bits (273), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 50/79 (63%), Positives = 65/79 (82%), Gaps = 1/79 (1%)

Query: 22  HSLPLARIKKIMKKSGEDVKMISGESPIIFSKACEIFIEELTRRSWIMAMQGKRRTLHKD 81
           HSLPLARIKKIMK + EDV+MIS E+P++F++ACE+FI ELT RSW    + KRRTL K+
Sbjct: 79  HSLPLARIKKIMK-ADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKN 137

Query: 82  DVASAVIATDVFDFLITLV 100
           D+A+AV  TD+FDFL+ +V
Sbjct: 138 DIAAAVTRTDIFDFLVDIV 156


>AT1G08970.3 | Symbols: HAP5C, NF-YC9 | nuclear factor Y, subunit C9
           | chr1:2883144-2883839 FORWARD LENGTH=231
          Length = 231

 Score =  109 bits (273), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 50/79 (63%), Positives = 65/79 (82%), Gaps = 1/79 (1%)

Query: 22  HSLPLARIKKIMKKSGEDVKMISGESPIIFSKACEIFIEELTRRSWIMAMQGKRRTLHKD 81
           HSLPLARIKKIMK + EDV+MIS E+P++F++ACE+FI ELT RSW    + KRRTL K+
Sbjct: 79  HSLPLARIKKIMK-ADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKN 137

Query: 82  DVASAVIATDVFDFLITLV 100
           D+A+AV  TD+FDFL+ +V
Sbjct: 138 DIAAAVTRTDIFDFLVDIV 156


>AT1G08970.1 | Symbols: HAP5C, NF-YC9 | nuclear factor Y, subunit C9
           | chr1:2883144-2883839 FORWARD LENGTH=231
          Length = 231

 Score =  109 bits (273), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 50/79 (63%), Positives = 65/79 (82%), Gaps = 1/79 (1%)

Query: 22  HSLPLARIKKIMKKSGEDVKMISGESPIIFSKACEIFIEELTRRSWIMAMQGKRRTLHKD 81
           HSLPLARIKKIMK + EDV+MIS E+P++F++ACE+FI ELT RSW    + KRRTL K+
Sbjct: 79  HSLPLARIKKIMK-ADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKN 137

Query: 82  DVASAVIATDVFDFLITLV 100
           D+A+AV  TD+FDFL+ +V
Sbjct: 138 DIAAAVTRTDIFDFLVDIV 156


>AT1G08970.4 | Symbols: HAP5C, NF-YC9 | nuclear factor Y, subunit C9
           | chr1:2883144-2883839 FORWARD LENGTH=231
          Length = 231

 Score =  109 bits (273), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 50/79 (63%), Positives = 65/79 (82%), Gaps = 1/79 (1%)

Query: 22  HSLPLARIKKIMKKSGEDVKMISGESPIIFSKACEIFIEELTRRSWIMAMQGKRRTLHKD 81
           HSLPLARIKKIMK + EDV+MIS E+P++F++ACE+FI ELT RSW    + KRRTL K+
Sbjct: 79  HSLPLARIKKIMK-ADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKN 137

Query: 82  DVASAVIATDVFDFLITLV 100
           D+A+AV  TD+FDFL+ +V
Sbjct: 138 DIAAAVTRTDIFDFLVDIV 156


>AT5G50480.1 | Symbols: NF-YC6 | nuclear factor Y, subunit C6 |
           chr5:20557856-20558464 REVERSE LENGTH=202
          Length = 202

 Score = 94.4 bits (233), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 44/77 (57%), Positives = 60/77 (77%), Gaps = 1/77 (1%)

Query: 24  LPLARIKKIMKKSGEDVKMISGESPIIFSKACEIFIEELTRRSWIMAMQGKRRTLHKDDV 83
           LPLARIKKIMK +  DV M+S E+PIIF+KACE+FI +LT RSW+ A + KR TL K D+
Sbjct: 55  LPLARIKKIMK-ADPDVHMVSAEAPIIFAKACEMFIVDLTMRSWLKAEENKRHTLQKSDI 113

Query: 84  ASAVIATDVFDFLITLV 100
           ++AV ++  +DFL+ +V
Sbjct: 114 SNAVASSFTYDFLLDVV 130


>AT5G27910.1 | Symbols: NF-YC8 | nuclear factor Y, subunit C8 |
           chr5:9940736-9941299 REVERSE LENGTH=187
          Length = 187

 Score = 87.8 bits (216), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 55/76 (72%), Gaps = 1/76 (1%)

Query: 22  HSLPLARIKKIMKKSGEDVKMISGESPIIFSKACEIFIEELTRRSWIMAMQGKRRTLHKD 81
           H LP+ RIKKIMK    DV MI+ E+PI+ SKACE+FI +LT RSW+ A + KR TL K 
Sbjct: 35  HDLPITRIKKIMKYD-PDVTMIASEAPILLSKACEMFIMDLTMRSWLHAQESKRVTLQKS 93

Query: 82  DVASAVIATDVFDFLI 97
           +V +AV  T +FDFL+
Sbjct: 94  NVDAAVAQTVIFDFLL 109


>AT5G50490.1 | Symbols: NF-YC5 | nuclear factor Y, subunit C5 |
           chr5:20560610-20561170 REVERSE LENGTH=186
          Length = 186

 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/75 (49%), Positives = 51/75 (68%), Gaps = 1/75 (1%)

Query: 22  HSLPLARIKKIMKKSGEDVKMISGESPIIFSKACEIFIEELTRRSWIMAMQGKRRTLHKD 81
           H  P++RIK+IMK    DV MI+ E+P + SKACE+F+ +LT RSW+ A +  R T+ K 
Sbjct: 35  HEFPISRIKRIMK-FDPDVSMIAAEAPNLLSKACEMFVMDLTMRSWLHAQESNRLTIRKS 93

Query: 82  DVASAVIATDVFDFL 96
           DV + V  T +FDFL
Sbjct: 94  DVDAVVSQTVIFDFL 108


>AT5G50470.1 | Symbols: NF-YC7 | nuclear factor Y, subunit C7 |
           chr5:20555120-20555758 REVERSE LENGTH=212
          Length = 212

 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 55/85 (64%), Gaps = 7/85 (8%)

Query: 22  HSLPLARIKKIMKKSGEDVKMISGESPIIFSKACEIFIEELTRRSWIMAMQGKRRTLH-- 79
           H+ PL RIKKIMK S  +V M++ E+P++ SKACE+ I +LT RSW+  ++G R+TL   
Sbjct: 62  HAFPLTRIKKIMK-SNPEVNMVTAEAPVLISKACEMLILDLTMRSWLHTVEGGRQTLKRS 120

Query: 80  ----KDDVASAVIATDVFDFLITLV 100
               + D+++A   +  F FL  +V
Sbjct: 121 DTLTRSDISAATTRSFKFTFLGDVV 145


>AT5G38140.1 | Symbols: NF-YC12 | nuclear factor Y, subunit C12 |
           chr5:15220377-15222025 REVERSE LENGTH=195
          Length = 195

 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 55/88 (62%), Gaps = 4/88 (4%)

Query: 13  GGISGRTGPHSLPLARIKKIMKKSGEDVKMISGESPIIFSKACEIFIEELTRRSWIMAMQ 72
           G  +G+T    LPL+R++KI+K S  +VK IS + P +FSKACE FI E+T R+W+    
Sbjct: 60  GNFAGQT---HLPLSRVRKILK-SDPEVKKISCDVPALFSKACEYFILEVTLRAWMHTQS 115

Query: 73  GKRRTLHKDDVASAVIATDVFDFLITLV 100
             R T+ + D+  AV  +  +DFLI  V
Sbjct: 116 CTRETIRRCDIFQAVKNSGTYDFLIDRV 143


>AT5G19490.1 | Symbols:  | Histone superfamily protein |
          chr5:6576769-6578273 REVERSE LENGTH=264
          Length = 264

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 24 LPLARIKKIMKKSGEDVKMISGESPIIFSKACEIFIEELTRRSWIMAMQGKRRTLHKDDV 83
           P  RIKKIM+ + E+V  I+   P++ SKA E+F+++L   ++ + +    +T++   +
Sbjct: 9  FPATRIKKIMQ-TDEEVGKIAMAVPLLVSKALELFLQDLCNHTYDVTLSRGAKTVNAFHL 67

Query: 84 ASAVIATDVFDFL 96
             V AT+VFDFL
Sbjct: 68 KQCVQATNVFDFL 80


>AT3G12480.1 | Symbols: NF-YC11 | nuclear factor Y, subunit C11 |
           chr3:3958065-3960278 FORWARD LENGTH=293
          Length = 293

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 1/77 (1%)

Query: 24  LPLARIKKIMKKSGEDVKMISGESPIIFSKACEIFIEELTRRSWIMAMQGKRRTLHKDDV 83
            P ARIKKIM+ + EDV  I+   P++ SK+ E+F+++L  R++ + ++   +T+    +
Sbjct: 9   FPAARIKKIMQ-ADEDVGKIALAVPVLVSKSLELFLQDLCDRTYEITLERGAKTVSSLHL 67

Query: 84  ASAVIATDVFDFLITLV 100
              V   +VFDFL  +V
Sbjct: 68  KHCVERYNVFDFLREVV 84