Miyakogusa Predicted Gene

Lj3g3v0682870.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0682870.1 tr|A2Q1F1|A2Q1F1_MEDTR SAM (And some other
nucleotide) binding motif OS=Medicago truncatula
GN=MtrDR,86.93,0,S-adenosyl-L-methionine-dependent
methyltransferases,NULL; no description,NULL; Met_10,tRNA
transfer,CUFF.41130.1
         (199 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G27340.1 | Symbols:  | Met-10+ like family protein | chr4:136...   313   5e-86
AT3G56120.1 | Symbols:  | S-adenosyl-L-methionine-dependent meth...    92   2e-19

>AT4G27340.1 | Symbols:  | Met-10+ like family protein |
           chr4:13687366-13690370 REVERSE LENGTH=619
          Length = 619

 Score =  313 bits (802), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 142/194 (73%), Positives = 174/194 (89%)

Query: 1   MEFAFRYWNSRLATERQRLLSGFTRNDVICDVFSGVGPLAISAARIVKRVYANDLNPYAI 60
           ++ A  YWNS+L TERQRLL GF +NDV+CDVF+GVGP+A++AARIVKRVYANDLNP+A+
Sbjct: 419 VDLARVYWNSKLGTERQRLLLGFDQNDVVCDVFAGVGPIALAAARIVKRVYANDLNPHAV 478

Query: 61  EYLERNSVLNKLERKIKVFNMDGRRFIKAIYASDKAQSITQVVMNLPNDAAEFLDAFRGI 120
           E++E+NSV+NKLE++I++FNMDGRRFIKA+++S+K Q +TQVVMNLP DAAE LDAFRG+
Sbjct: 479 EFMEQNSVVNKLEKRIEIFNMDGRRFIKAMFSSEKGQKVTQVVMNLPKDAAESLDAFRGV 538

Query: 121 YKDRPTDGDFTLPLIHVYGFSKARDPEFDFHERIRIALLEVAVNVEMRRVRLVAPGKWML 180
           Y DR  D   + P IHVYGFSKA DPEFDFHERIRIAL EVAV+V+MR+VRLVAPGKWML
Sbjct: 539 YNDRHRDEGLSFPTIHVYGFSKASDPEFDFHERIRIALSEVAVDVKMRKVRLVAPGKWML 598

Query: 181 CASFILPKSVAFAK 194
           CASFILPK+VAF++
Sbjct: 599 CASFILPKNVAFSR 612


>AT3G56120.1 | Symbols:  | S-adenosyl-L-methionine-dependent
           methyltransferases superfamily protein |
           chr3:20823243-20826357 FORWARD LENGTH=468
          Length = 468

 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 68/119 (57%), Gaps = 2/119 (1%)

Query: 1   MEFAFRYWNSRLATERQRLLSGFTRNDVICDVFSGVGPLAISAARIVKRVYANDLNPYAI 60
           +++   YWNSRL  E  RL S F   + +CD+F+G+GP AI AA+    VYANDLNP ++
Sbjct: 192 LDYGLVYWNSRLEHEHMRLSSLFKPGETVCDMFAGIGPFAIPAAQKGCFVYANDLNPDSV 251

Query: 61  EYLERNSVLNKLERKIKVFNMDGRRFIKAIYASDKAQSITQVVMNLPNDAAEFLDAFRG 119
            YL+ N+  NK++  I V NMD R+F   + A    +   Q V +  ND  +     RG
Sbjct: 252 RYLKINAKFNKVDDLICVHNMDARKFFSHLMAVSTCEDNLQSVAD--NDKTKEAAVSRG 308



 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 12/99 (12%)

Query: 97  QSITQVVMNLPNDAAEFLDAFRGIYKDRPTDGDFTLPLIHVYGFSKARDPEFDFHERIRI 156
           + I  V+MNLP  A +FLD+F  + + +   G   LPLIH Y F +A +          I
Sbjct: 372 EHIDHVIMNLPASALQFLDSFSNVIQKKYWKG--PLPLIHCYCFIRASET-----TEFII 424

Query: 157 ALLEVAVNVEM-----RRVRLVAPGKWMLCASFILPKSV 190
           A  E A+   +      +VR VAP K M C SF LP++ 
Sbjct: 425 AEAETALKFHIEDPVFHKVRDVAPNKAMFCLSFRLPEAC 463