Miyakogusa Predicted Gene

Lj3g3v0681690.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0681690.1 Non Chatacterized Hit- tr|K4CG17|K4CG17_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,61.9,2e-19,seg,NULL; DUF3774,Protein of unknown function
wound-induced,CUFF.41138.1
         (91 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G10265.1 | Symbols:  | Wound-responsive family protein | chr4...    84   3e-17
AT4G10270.1 | Symbols:  | Wound-responsive family protein | chr4...    80   3e-16
AT4G33560.1 | Symbols:  | Wound-responsive family protein | chr4...    54   2e-08

>AT4G10265.1 | Symbols:  | Wound-responsive family protein |
          chr4:6373226-6373477 REVERSE LENGTH=83
          Length = 83

 Score = 83.6 bits (205), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 52/83 (62%), Gaps = 2/83 (2%)

Query: 5  AATRAWIVASSVGVVEALKDQLGVCRWNYALRSLQQHAKTNIRSYXXXXXXXXXXXXXXX 64
          +A++ W+VA+S+G VEALKDQLGVCRWNY +RS  Q+ + N+RS                
Sbjct: 3  SASKTWMVAASIGAVEALKDQLGVCRWNYVIRSANQYLRNNLRS--VSQAKKLSSSSIDY 60

Query: 65 XXXXRTKEESMRKVMDLNCWGPS 87
              +  EES+R VM L+CWGPS
Sbjct: 61 TNKTKQAEESLRTVMYLSCWGPS 83


>AT4G10270.1 | Symbols:  | Wound-responsive family protein |
          chr4:6374805-6375077 FORWARD LENGTH=90
          Length = 90

 Score = 80.1 bits (196), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 52/88 (59%), Gaps = 5/88 (5%)

Query: 5  AATRAWIVASSVGVVEALKDQLGVCRWNYALRSLQQHAKTNIRSYXXXXXXXXXXXXXXX 64
          + ++AW VA S+G VEALKDQLG+CRWNY LRS+ QH + N+RS                
Sbjct: 3  STSKAWTVAVSIGAVEALKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSAAV 62

Query: 65 XXXXRTK-----EESMRKVMDLNCWGPS 87
               ++     EES+R VM L+CWGP+
Sbjct: 63 TSSGESEKAKKAEESLRTVMYLSCWGPN 90


>AT4G33560.1 | Symbols:  | Wound-responsive family protein |
          chr4:16135465-16135752 FORWARD LENGTH=95
          Length = 95

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 40/89 (44%), Gaps = 7/89 (7%)

Query: 9  AWIVASSVGVVEALKDQLGVCRWNYALRSLQQHAKTNIRSYXXXXXXXXXXXXXXXXXXX 68
          +W VA+++  VE LKDQ GV RWNY  R L + A   +R+                    
Sbjct: 8  SWAVATAIAAVEVLKDQ-GVARWNYLFRLLHKEAMARVRTITVPSRPSPPTSSSSATSIR 66

Query: 69 RTK------EESMRKVMDLNCWGPSTARF 91
                   E S  K M L+C+GP+T RF
Sbjct: 67 SKPLSTTPFETSFEKAMGLSCFGPTTVRF 95