Miyakogusa Predicted Gene
- Lj3g3v0681380.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0681380.1 Non Chatacterized Hit- tr|I3T7A0|I3T7A0_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,99.63,0,Chloroa_b-bind,Chlorophyll A-B binding protein; no
description,Chlorophyll a/b binding protein domai,CUFF.41151.1
(270 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G54270.1 | Symbols: LHCB3, LHCB3*1 | light-harvesting chlorop... 484 e-137
AT2G05100.1 | Symbols: LHCB2.1, LHCB2 | photosystem II light har... 357 7e-99
AT2G05070.1 | Symbols: LHCB2.2, LHCB2 | photosystem II light har... 354 3e-98
AT3G27690.1 | Symbols: LHCB2.4, LHCB2.3, LHCB2 | photosystem II ... 352 2e-97
AT1G29930.1 | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyl... 347 4e-96
AT1G29920.1 | Symbols: CAB2, AB165, LHCB1.1 | chlorophyll A/B-bi... 345 2e-95
AT1G29910.1 | Symbols: CAB3, AB180, LHCB1.2 | chlorophyll A/B bi... 345 2e-95
AT2G34430.1 | Symbols: LHB1B1, LHCB1.4 | light-harvesting chloro... 342 2e-94
AT2G34420.1 | Symbols: LHB1B2, LHCB1.5 | photosystem II light ha... 341 3e-94
AT1G76570.1 | Symbols: | Chlorophyll A-B binding family protein... 191 6e-49
AT4G10340.1 | Symbols: LHCB5 | light harvesting complex of photo... 176 2e-44
AT1G61520.3 | Symbols: LHCA3 | photosystem I light harvesting co... 139 2e-33
AT1G61520.1 | Symbols: LHCA3 | photosystem I light harvesting co... 139 2e-33
AT1G61520.2 | Symbols: LHCA3 | photosystem I light harvesting co... 127 8e-30
AT3G61470.1 | Symbols: LHCA2 | photosystem I light harvesting co... 127 9e-30
AT1G45474.2 | Symbols: LHCA5 | photosystem I light harvesting co... 121 6e-28
AT1G45474.1 | Symbols: LHCA5 | photosystem I light harvesting co... 121 6e-28
AT3G08940.2 | Symbols: LHCB4.2 | light harvesting complex photos... 118 4e-27
AT3G54890.1 | Symbols: LHCA1 | photosystem I light harvesting co... 118 5e-27
AT1G19150.1 | Symbols: LHCA6, LHCA2*1 | photosystem I light harv... 112 3e-25
AT5G01530.1 | Symbols: LHCB4.1 | light harvesting complex photos... 111 5e-25
AT3G47470.1 | Symbols: LHCA4, CAB4 | light-harvesting chlorophyl... 108 4e-24
AT2G40100.1 | Symbols: LHCB4.3 | light harvesting complex photos... 92 5e-19
AT1G15820.1 | Symbols: LHCB6, CP24 | light harvesting complex ph... 91 6e-19
AT3G54890.2 | Symbols: LHCA1 | photosystem I light harvesting co... 86 2e-17
AT3G54890.4 | Symbols: LHCA1 | photosystem I light harvesting co... 86 3e-17
AT5G28450.1 | Symbols: | Chlorophyll A-B binding family protein... 73 3e-13
AT3G54890.3 | Symbols: LHCA1 | photosystem I light harvesting co... 54 2e-07
>AT5G54270.1 | Symbols: LHCB3, LHCB3*1 | light-harvesting
chlorophyll B-binding protein 3 | chr5:22038424-22039383
FORWARD LENGTH=265
Length = 265
Score = 484 bits (1247), Expect = e-137, Method: Compositional matrix adjust.
Identities = 234/259 (90%), Positives = 246/259 (94%)
Query: 12 SSGTVIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVKYLGPFSAQTPSY 71
SS +V+ P+ FLGQTK S+ N LRDVVS+G+ KYTMGNDLWYGPDRVKYLGPFS QTPSY
Sbjct: 7 SSSSVLTPTTFLGQTKASSFNPLRDVVSLGSPKYTMGNDLWYGPDRVKYLGPFSVQTPSY 66
Query: 72 LTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKE 131
LTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGA GCITPEVL+KWVRVDFKE
Sbjct: 67 LTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWVRVDFKE 126
Query: 132 PVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPGVGEGNN 191
PVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRINGL GVGEGN+
Sbjct: 127 PVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLDGVGEGND 186
Query: 192 LYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL 251
LYPGGQYFDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL
Sbjct: 187 LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL 246
Query: 252 DDPVANNAWVYATKFVPGS 270
D+PVANNAW +ATKF PG+
Sbjct: 247 DNPVANNAWAFATKFAPGA 265
>AT2G05100.1 | Symbols: LHCB2.1, LHCB2 | photosystem II light
harvesting complex gene 2.1 | chr2:1823449-1824331
REVERSE LENGTH=265
Length = 265
Score = 357 bits (915), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 188/265 (70%), Positives = 206/265 (77%), Gaps = 12/265 (4%)
Query: 15 TVIKPSPFLGQTKGSNSNTL-RDVVSMGTGKYTMG-------NDLWYGPDRVKYLGPFSA 66
+ I+ S F GQT SN L R V G G+ TM +WYGPDR KYLGPFS
Sbjct: 4 SAIQQSSFAGQTALKPSNELLRKVGVSGGGRVTMRRTVKSTPQSIWYGPDRPKYLGPFSE 63
Query: 67 QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVR 126
TPSYLTGE+PGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC PE+L K
Sbjct: 64 NTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSK-NG 122
Query: 127 VDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPGV 186
V F E VWFKAGSQIFSEGGLDYLGNPNL+HAQSILA+ QV+LMG +EG+RI G P +
Sbjct: 123 VKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGGGP-L 181
Query: 187 GEG-NNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 245
GEG + LYPGG FDPL LA+DP F+ELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+E
Sbjct: 182 GEGLDPLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
Query: 246 NLLDHLDDPVANNAWVYATKFVPGS 270
NL DHL DPVANNAW YAT FVPG+
Sbjct: 241 NLFDHLADPVANNAWSYATNFVPGN 265
>AT2G05070.1 | Symbols: LHCB2.2, LHCB2 | photosystem II light
harvesting complex gene 2.2 | chr2:1799436-1800329
REVERSE LENGTH=265
Length = 265
Score = 354 bits (909), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 185/264 (70%), Positives = 207/264 (78%), Gaps = 12/264 (4%)
Query: 15 TVIKPSPFLGQTK-GSNSNTLRDVVSMGTGKYTMG-------NDLWYGPDRVKYLGPFSA 66
+ I+ S F GQT +S+ ++ V +G G+ TM +WYGPDR KYLGPFS
Sbjct: 4 SAIQQSSFAGQTALKPSSDLIQKVGVLGGGRVTMRRTVKSTPQSIWYGPDRPKYLGPFSE 63
Query: 67 QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVR 126
TPSYLTGE+PGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC PE+L K
Sbjct: 64 NTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSK-NG 122
Query: 127 VDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPGV 186
V F E VWFKAGSQIFSEGGLDYLGNPNL+HAQSILA+ QV+LMG +EG+RI G P +
Sbjct: 123 VKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGGGP-L 181
Query: 187 GEG-NNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 245
GEG + LYPGG FDPL LA+DP F+ELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+E
Sbjct: 182 GEGLDPLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
Query: 246 NLLDHLDDPVANNAWVYATKFVPG 269
NL DHL DPVANNAW YAT FVPG
Sbjct: 241 NLFDHLADPVANNAWSYATNFVPG 264
>AT3G27690.1 | Symbols: LHCB2.4, LHCB2.3, LHCB2 | photosystem II
light harvesting complex gene 2.3 |
chr3:10256002-10256921 FORWARD LENGTH=266
Length = 266
Score = 352 bits (902), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 185/265 (69%), Positives = 204/265 (76%), Gaps = 13/265 (4%)
Query: 15 TVIKPSPFLGQTKGSNSNTLRDVV--SMGTGKYTMG-------NDLWYGPDRVKYLGPFS 65
+ I+ S F GQT SN L + S G G+ M +WYGPDR KYLGPFS
Sbjct: 4 SAIQHSSFAGQTTLKPSNDLLRKIGASNGGGRIIMRRTVKSTPQSIWYGPDRPKYLGPFS 63
Query: 66 AQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWV 125
TPSYLTGE+PGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC PE+L K
Sbjct: 64 ENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSK-N 122
Query: 126 RVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPG 185
V F E VWFKAGSQIFSEGGLDYLGNPNL+HAQSILA+ QV+LMG +EG+RI G P
Sbjct: 123 GVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFIEGYRIGGGP- 181
Query: 186 VGEG-NNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 244
+GEG + LYPGG FDPL LA+DP F+ELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+
Sbjct: 182 LGEGLDPLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 240
Query: 245 ENLLDHLDDPVANNAWVYATKFVPG 269
ENL DH+ DPVANNAW YAT FVPG
Sbjct: 241 ENLFDHIADPVANNAWAYATNFVPG 265
>AT1G29930.1 | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyll
A/B binding protein 1 | chr1:10478071-10478874 FORWARD
LENGTH=267
Length = 267
Score = 347 bits (890), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 178/258 (68%), Positives = 200/258 (77%), Gaps = 6/258 (2%)
Query: 13 SGTVIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVKYLGPFSAQTPSYL 72
+G +K SP + GS T+R V+ G WYG DRVKYLGPFS ++PSYL
Sbjct: 14 AGKAVKLSPAASEVLGSGRVTMRKTVAKPKGP---SGSPWYGSDRVKYLGPFSGESPSYL 70
Query: 73 TGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEP 132
TGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L + V F E
Sbjct: 71 TGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLAR-NGVKFGEA 129
Query: 133 VWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPGVGEGNN- 191
VWFKAGSQIFS+GGLDYLGNP+LVHAQSILA+ QV+LMG VEG+R+ G +GE +
Sbjct: 130 VWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDL 189
Query: 192 LYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL 251
LYPGG FDPLGLA DP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DHL
Sbjct: 190 LYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHL 248
Query: 252 DDPVANNAWVYATKFVPG 269
DPV NNAW +AT FVPG
Sbjct: 249 ADPVNNNAWAFATNFVPG 266
>AT1G29920.1 | Symbols: CAB2, AB165, LHCB1.1 | chlorophyll
A/B-binding protein 2 | chr1:10475089-10475892 REVERSE
LENGTH=267
Length = 267
Score = 345 bits (885), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 177/258 (68%), Positives = 199/258 (77%), Gaps = 6/258 (2%)
Query: 13 SGTVIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVKYLGPFSAQTPSYL 72
+G + SP + GS T+R V+ G WYG DRVKYLGPFS ++PSYL
Sbjct: 14 AGKAVNLSPAASEVLGSGRVTMRKTVAKPKGP---SGSPWYGSDRVKYLGPFSGESPSYL 70
Query: 73 TGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEP 132
TGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L + V F E
Sbjct: 71 TGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLAR-NGVKFGEA 129
Query: 133 VWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPGVGEGNN- 191
VWFKAGSQIFS+GGLDYLGNP+LVHAQSILA+ QV+LMG VEG+R+ G +GE +
Sbjct: 130 VWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDL 189
Query: 192 LYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL 251
LYPGG FDPLGLA DP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DHL
Sbjct: 190 LYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHL 248
Query: 252 DDPVANNAWVYATKFVPG 269
DPV NNAW +AT FVPG
Sbjct: 249 ADPVNNNAWAFATNFVPG 266
>AT1G29910.1 | Symbols: CAB3, AB180, LHCB1.2 | chlorophyll A/B
binding protein 3 | chr1:10472443-10473246 REVERSE
LENGTH=267
Length = 267
Score = 345 bits (885), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 177/258 (68%), Positives = 199/258 (77%), Gaps = 6/258 (2%)
Query: 13 SGTVIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVKYLGPFSAQTPSYL 72
+G + SP + GS T+R V+ G WYG DRVKYLGPFS ++PSYL
Sbjct: 14 AGKAVNLSPAASEVLGSGRVTMRKTVAKPKGP---SGSPWYGSDRVKYLGPFSGESPSYL 70
Query: 73 TGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEP 132
TGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L + V F E
Sbjct: 71 TGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLAR-NGVKFGEA 129
Query: 133 VWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPGVGEGNN- 191
VWFKAGSQIFS+GGLDYLGNP+LVHAQSILA+ QV+LMG VEG+R+ G +GE +
Sbjct: 130 VWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDL 189
Query: 192 LYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL 251
LYPGG FDPLGLA DP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DHL
Sbjct: 190 LYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHL 248
Query: 252 DDPVANNAWVYATKFVPG 269
DPV NNAW +AT FVPG
Sbjct: 249 ADPVNNNAWAFATNFVPG 266
>AT2G34430.1 | Symbols: LHB1B1, LHCB1.4 | light-harvesting
chlorophyll-protein complex II subunit B1 |
chr2:14524818-14525618 FORWARD LENGTH=266
Length = 266
Score = 342 bits (876), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 179/258 (69%), Positives = 199/258 (77%), Gaps = 7/258 (2%)
Query: 13 SGTVIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVKYLGPFSAQTPSYL 72
+G +K SP + G+ T+R S TG WYG DRVKYLGPFS + PSYL
Sbjct: 14 TGKAVKLSPAASEVFGTGRITMRKA-SKPTGP---SGSPWYGSDRVKYLGPFSGEPPSYL 69
Query: 73 TGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEP 132
TGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L + V F E
Sbjct: 70 TGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLAR-NGVKFGEA 128
Query: 133 VWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPGVGEGNN- 191
VWFKAGSQIFS+GGLDYLGNP+LVHAQSILA+ QV+LMG VEG+R+ G +GE +
Sbjct: 129 VWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDL 188
Query: 192 LYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL 251
LYPGG FDPLGLA DP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENL DHL
Sbjct: 189 LYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL 247
Query: 252 DDPVANNAWVYATKFVPG 269
DPV NNAW +AT FVPG
Sbjct: 248 ADPVNNNAWAFATNFVPG 265
>AT2G34420.1 | Symbols: LHB1B2, LHCB1.5 | photosystem II light
harvesting complex gene B1B2 | chr2:14522716-14523513
REVERSE LENGTH=265
Length = 265
Score = 341 bits (874), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 178/258 (68%), Positives = 198/258 (76%), Gaps = 8/258 (3%)
Query: 13 SGTVIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVKYLGPFSAQTPSYL 72
+G +KP+ GS T+R V+ G WYG DRVKYLGPFS + PSYL
Sbjct: 14 AGKAVKPA--ASDVLGSGRVTMRKTVAKPKGP---SGSPWYGSDRVKYLGPFSGEPPSYL 68
Query: 73 TGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEP 132
TGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L + V F E
Sbjct: 69 TGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLAR-NGVKFGEA 127
Query: 133 VWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPGVGEGNN- 191
VWFKAGSQIFS+GGLDYLGNP+LVHAQSILA+ QV+LMG VEG+R+ G +GE +
Sbjct: 128 VWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDL 187
Query: 192 LYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL 251
LYPGG FDPLGLA DP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENL DHL
Sbjct: 188 LYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL 246
Query: 252 DDPVANNAWVYATKFVPG 269
DPV NNAW +AT FVPG
Sbjct: 247 ADPVNNNAWAFATNFVPG 264
>AT1G76570.1 | Symbols: | Chlorophyll A-B binding family protein |
chr1:28729132-28730754 FORWARD LENGTH=327
Length = 327
Score = 191 bits (484), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 102/215 (47%), Positives = 129/215 (60%), Gaps = 8/215 (3%)
Query: 52 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLG 111
WYG +R ++ GP P YLTGE PGDYG+D AGL D F K E++H RWAML
Sbjct: 106 WYGKERPRWFGPIPYDYPPYLTGELPGDYGFDIAGLGKDRLTFDKYFNFEILHARWAMLA 165
Query: 112 ALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHA--QSILAVLGFQV 169
ALG + PEV + F EPVW++ G L+YLG P L A Q ++ + QV
Sbjct: 166 ALGALIPEVFDLTGTFHFAEPVWWRVGYSKLQGETLEYLGIPGLHVAGSQGVIVIAICQV 225
Query: 170 LLMGLVEGFRINGLPGVG------EGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGR 223
LLM E R G+ + G+ YPGG FDPL L++DP F +LKVKEIKNGR
Sbjct: 226 LLMVGPEYARYCGIEALEPLGIYLPGDINYPGGTLFDPLNLSEDPVAFEDLKVKEIKNGR 285
Query: 224 LAMFSMFGFFVQAIVTGKGPLENLLDHLDDPVANN 258
LAM + GF+ QA TGKGP++NL+DH+ DP+ NN
Sbjct: 286 LAMVAWLGFYAQAAFTGKGPVQNLVDHVSDPLHNN 320
>AT4G10340.1 | Symbols: LHCB5 | light harvesting complex of
photosystem II 5 | chr4:6408200-6409496 FORWARD
LENGTH=280
Length = 280
Score = 176 bits (445), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 105/210 (50%), Positives = 129/210 (61%), Gaps = 9/210 (4%)
Query: 52 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 108
WYGPDR +L ++ P YL GE GDYG+D GL PE FAK +A E+IH RWA
Sbjct: 62 WYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWA 121
Query: 109 MLGALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 168
MLGA G I PE L K+ E VWFK G+ + L+Y G ++ + +
Sbjct: 122 MLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVA---E 178
Query: 169 VLLMGLVEGFRINGLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFS 228
V+L+G E +RI G+ + L+PGG FDPLGLA DP A LKVKEIKNGRLAMF+
Sbjct: 179 VVLLGGAEYYRITN--GLDFEDKLHPGGP-FDPLGLAKDPEQGALLKVKEIKNGRLAMFA 235
Query: 229 MFGFFVQAIVTGKGPLENLLDHLDDPVANN 258
M GFF+QA VTG+GP+ENL HL DP NN
Sbjct: 236 MLGFFIQAYVTGEGPVENLAKHLSDPFGNN 265
>AT1G61520.3 | Symbols: LHCA3 | photosystem I light harvesting
complex gene 3 | chr1:22700152-22701149 FORWARD
LENGTH=273
Length = 273
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 95/217 (43%), Positives = 122/217 (56%), Gaps = 33/217 (15%)
Query: 65 SAQTPSYLTGEFPGDYGWDTAGLSADPEA---FAKNRAL---EVIHGRWAMLGALGCITP 118
S+Q+ SYL G PGDYG+D GLS DPE F + R L E+I+GR+AMLGA G I P
Sbjct: 59 SSQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAP 117
Query: 119 EVLEKWVRVDFKEPV-WFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEG 177
E+L K + + + WF+ G I G Y + L VL ++ LMG E
Sbjct: 118 EILGKAGLIPAETALPWFQTGV-IPPAGTYTYWAD------NYTLFVL--EMALMGFAEH 168
Query: 178 FRINGL--PG--------------VGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKN 221
R+ PG G GN YPGG +F+PLG D + ELK+KE+KN
Sbjct: 169 RRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKN 228
Query: 222 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLDDPVANN 258
GRLAM ++ G+F+Q +VTG GP +NLLDHL DPV NN
Sbjct: 229 GRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNN 265
>AT1G61520.1 | Symbols: LHCA3 | photosystem I light harvesting
complex gene 3 | chr1:22700152-22701149 FORWARD
LENGTH=273
Length = 273
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 95/217 (43%), Positives = 122/217 (56%), Gaps = 33/217 (15%)
Query: 65 SAQTPSYLTGEFPGDYGWDTAGLSADPEA---FAKNRAL---EVIHGRWAMLGALGCITP 118
S+Q+ SYL G PGDYG+D GLS DPE F + R L E+I+GR+AMLGA G I P
Sbjct: 59 SSQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAP 117
Query: 119 EVLEKWVRVDFKEPV-WFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEG 177
E+L K + + + WF+ G I G Y + L VL ++ LMG E
Sbjct: 118 EILGKAGLIPAETALPWFQTGV-IPPAGTYTYWAD------NYTLFVL--EMALMGFAEH 168
Query: 178 FRINGL--PG--------------VGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKN 221
R+ PG G GN YPGG +F+PLG D + ELK+KE+KN
Sbjct: 169 RRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKN 228
Query: 222 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLDDPVANN 258
GRLAM ++ G+F+Q +VTG GP +NLLDHL DPV NN
Sbjct: 229 GRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNN 265
>AT1G61520.2 | Symbols: LHCA3 | photosystem I light harvesting
complex gene 3 | chr1:22700493-22701149 FORWARD
LENGTH=218
Length = 218
Score = 127 bits (319), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 89/207 (42%), Positives = 114/207 (55%), Gaps = 33/207 (15%)
Query: 75 EFPGDYGWDTAGLSADPEA---FAKNRAL---EVIHGRWAMLGALGCITPEVLEKWVRVD 128
PGDYG+D GLS DPE F + R L E+I+GR+AMLGA G I PE+L K +
Sbjct: 14 SLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIP 72
Query: 129 FKEPV-WFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGL--PG 185
+ + WF+ G I G Y + L VL ++ LMG E R+ PG
Sbjct: 73 AETALPWFQTGV-IPPAGTYTYWAD------NYTLFVL--EMALMGFAEHRRLQDWYNPG 123
Query: 186 --------------VGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFG 231
G GN YPGG +F+PLG D + ELK+KE+KNGRLAM ++ G
Sbjct: 124 SMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILG 183
Query: 232 FFVQAIVTGKGPLENLLDHLDDPVANN 258
+F+Q +VTG GP +NLLDHL DPV NN
Sbjct: 184 YFIQGLVTGVGPYQNLLDHLADPVNNN 210
>AT3G61470.1 | Symbols: LHCA2 | photosystem I light harvesting
complex gene 2 | chr3:22745736-22747032 FORWARD
LENGTH=257
Length = 257
Score = 127 bits (318), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 115/215 (53%), Gaps = 34/215 (15%)
Query: 55 PDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALG 114
PDR + + P +L G PGD+G+D GLS+DP++ N E++H RWAMLGA G
Sbjct: 50 PDRPIWFP--GSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAG 107
Query: 115 CITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGL 174
PE L K + + P W+ AG Q +Y + ++ L V+ +++L+G
Sbjct: 108 IFIPEFLTK-IGI-LNTPSWYTAGEQ-------EYFTD------KTTLFVV--ELILIGW 150
Query: 175 VEGFRINGL--PG------VGEGNNL------YPGGQYFDPLGLAD-DPATFAELKVKEI 219
EG R + PG V N L YPGG +FDPLG PA EL+ KEI
Sbjct: 151 AEGRRWADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEI 210
Query: 220 KNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDDP 254
KNGRLAM ++ G + Q I TG GP++NL HL DP
Sbjct: 211 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 245
>AT1G45474.2 | Symbols: LHCA5 | photosystem I light harvesting
complex gene 5 | chr1:17179353-17180439 FORWARD
LENGTH=256
Length = 256
Score = 121 bits (303), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 103/195 (52%), Gaps = 17/195 (8%)
Query: 69 PSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKW-VRV 127
P YL G GDYG+D GL DPE+ E++H R+AMLG G + ++L +R
Sbjct: 56 PPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIR- 114
Query: 128 DFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLV-------EGFRI 180
PVW++AG+ F D+ L+ Q +L M V EG
Sbjct: 115 --NLPVWYEAGAVKF-----DFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFF 167
Query: 181 NGLPGVGEGNNL-YPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVT 239
GL EG YPGG +PLGLA D + K+KEIKNGRLAM +M GFFVQA VT
Sbjct: 168 FGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQASVT 227
Query: 240 GKGPLENLLDHLDDP 254
GP++NL++HL +P
Sbjct: 228 HTGPIDNLVEHLSNP 242
>AT1G45474.1 | Symbols: LHCA5 | photosystem I light harvesting
complex gene 5 | chr1:17179353-17180439 FORWARD
LENGTH=256
Length = 256
Score = 121 bits (303), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 103/195 (52%), Gaps = 17/195 (8%)
Query: 69 PSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKW-VRV 127
P YL G GDYG+D GL DPE+ E++H R+AMLG G + ++L +R
Sbjct: 56 PPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIR- 114
Query: 128 DFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLV-------EGFRI 180
PVW++AG+ F D+ L+ Q +L M V EG
Sbjct: 115 --NLPVWYEAGAVKF-----DFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFF 167
Query: 181 NGLPGVGEGNNL-YPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVT 239
GL EG YPGG +PLGLA D + K+KEIKNGRLAM +M GFFVQA VT
Sbjct: 168 FGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQASVT 227
Query: 240 GKGPLENLLDHLDDP 254
GP++NL++HL +P
Sbjct: 228 HTGPIDNLVEHLSNP 242
>AT3G08940.2 | Symbols: LHCB4.2 | light harvesting complex
photosystem II | chr3:2717717-2718665 FORWARD LENGTH=287
Length = 287
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 85/233 (36%), Positives = 109/233 (46%), Gaps = 58/233 (24%)
Query: 66 AQTPSYLTGEFPGDYGWDTAGL--------------------------------SADPEA 93
A++P YL G GDYG+D GL + DP++
Sbjct: 59 AKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKS 118
Query: 94 -----------FAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGSQIF 142
+ R E+IHGRWAML LG IT E L W AG
Sbjct: 119 TPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTG--------VTWQDAGKVEL 170
Query: 143 SEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPGVGEGNNLYPGGQYFDPL 202
+G YLG P SI ++ +VL++G +E F+ N + LYPGG++FDPL
Sbjct: 171 VDGS-SYLGQP---LPFSISTLIWIEVLVIGYIE-FQRNA--ELDSEKRLYPGGKFFDPL 223
Query: 203 GLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDDPV 255
GLA DP A+L++ EIK+ RLAM GF VQA TGKGPL N HL DP+
Sbjct: 224 GLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPL 276
>AT3G54890.1 | Symbols: LHCA1 | photosystem I light harvesting
complex gene 1 | chr3:20339706-20340922 REVERSE
LENGTH=241
Length = 241
Score = 118 bits (295), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 81/194 (41%), Positives = 99/194 (51%), Gaps = 20/194 (10%)
Query: 69 PSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVL--EKWVR 126
P+YL G PGD+G+D GL P + + E+IH RWAML G + PE L WV+
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVK 114
Query: 127 VDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFR-INGLPG 185
W G YLGNP V ++ +L + L + VE R + P
Sbjct: 115 AQ----EW-----AALPGGQATYLGNP--VPWGTLPTILAIEFLAIAFVEHQRSMEKDP- 162
Query: 186 VGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPL 244
YPGG FDPLG + DP ELKVKEIKNGRLA+ + GF V Q+ G GPL
Sbjct: 163 ---EKKKYPGGA-FDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 218
Query: 245 ENLLDHLDDPVANN 258
ENL HL DP NN
Sbjct: 219 ENLATHLADPWHNN 232
>AT1G19150.1 | Symbols: LHCA6, LHCA2*1 | photosystem I light
harvesting complex gene 6 | chr1:6612806-6613799 FORWARD
LENGTH=270
Length = 270
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 86/260 (33%), Positives = 116/260 (44%), Gaps = 47/260 (18%)
Query: 21 PFLGQTKGSNSNTLRD-VVSMGTGKYTMGNDLWYGPDRVKYLGPFSAQTPSYLTGEFPGD 79
P + T + +R+ +V + GK PDR + + P +L G PGD
Sbjct: 28 PHVASTSSTGGRLMRERLVVVRAGKEVSSVCEPLPPDRPLWFP--GSSPPEWLDGSLPGD 85
Query: 80 YGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPV-WFKAG 138
+G+D GL +DP+ E+IH RWAML G I PE LE R+ F E W+ AG
Sbjct: 86 FGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECLE---RLGFIENFSWYDAG 142
Query: 139 SQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFR------------------- 179
S+ +Y + + Q++LMG EG R
Sbjct: 143 SR-------EYFADSTTLFVA--------QMVLMGWAEGRRWADLIKPGSVDIEPKYPHK 187
Query: 180 INGLPGVGEGNNLYPGGQYFDPLGLAD-DPATFAELKVKEIKNGRLAMFSMFGFFVQAIV 238
+N P VG YPGG +FD + P L+ KEIKNGRLAM + GF QA
Sbjct: 188 VNPKPDVG-----YPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQATY 242
Query: 239 TGKGPLENLLDHLDDPVANN 258
T + P+ENL+ HL DP N
Sbjct: 243 TSQDPIENLMAHLADPGHCN 262
>AT5G01530.1 | Symbols: LHCB4.1 | light harvesting complex
photosystem II | chr5:209084-210243 FORWARD LENGTH=290
Length = 290
Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 90/160 (56%), Gaps = 15/160 (9%)
Query: 96 KNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNL 155
+ R E+IHGRWAML LG ++ E L W AG +G YLG P
Sbjct: 135 RFRECELIHGRWAMLATLGALSVEWLTG--------VTWQDAGKVELVDGS-SYLGQPLP 185
Query: 156 VHAQSILAVLGFQVLLMGLVEGFRINGLPGVGEGNNLYPGGQYFDPLGLADDPATFAELK 215
SI ++ +VL++G +E F+ N + LYPGG++FDPLGLA DP A+L+
Sbjct: 186 F---SISTLIWIEVLVIGYIE-FQRNA--ELDSEKRLYPGGKFFDPLGLAADPEKTAQLQ 239
Query: 216 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDDPV 255
+ EIK+ RLAM + GF VQA TGKGPL N HL DP+
Sbjct: 240 LAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPL 279
>AT3G47470.1 | Symbols: LHCA4, CAB4 | light-harvesting
chlorophyll-protein complex I subunit A4 |
chr3:17493622-17494773 REVERSE LENGTH=251
Length = 251
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 97/204 (47%), Gaps = 36/204 (17%)
Query: 68 TPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRV 127
+P YLTG GD G+D GL+ DPE E+++GRWAMLG G + PEV K +
Sbjct: 63 SPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII 122
Query: 128 DFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPGVG 187
+ P W+ AG + + + S L V+ F +L VE R + G
Sbjct: 123 NV--PEWYDAGKEQY-------------FASSSTLFVIEF--ILFHYVEIRRWQDIKNPG 165
Query: 188 EGNNL--------------YPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFF 233
N YPGG F+PL A E K KE+ NGRLAM + GF
Sbjct: 166 SVNQDPIFKQYSLPKGEVGYPGG-IFNPLNFAPT----QEAKEKELANGRLAMLAFLGFV 220
Query: 234 VQAIVTGKGPLENLLDHLDDPVAN 257
VQ VTGKGP ENLL HL DP N
Sbjct: 221 VQHNVTGKGPFENLLQHLSDPWHN 244
>AT2G40100.1 | Symbols: LHCB4.3 | light harvesting complex
photosystem II | chr2:16745884-16747190 FORWARD
LENGTH=276
Length = 276
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 80/152 (52%), Gaps = 16/152 (10%)
Query: 96 KNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNL 155
+ R E+IHGRWAMLG LG I E L W AG EG YLG P
Sbjct: 136 RFRECELIHGRWAMLGTLGAIAVEALTGIA--------WQDAGKVELVEGS-SYLGQP-- 184
Query: 156 VHAQSILAVLGFQVLLMGLVEGFRINGLPGVGEGNNLYPGGQYFDPLGLADDPATFAELK 215
S+ ++ +VL++G +E R + L +YPGG YFDPLGLA DP LK
Sbjct: 185 -LPFSLTTLIWIEVLVVGYIEFQRNSEL---DPEKRIYPGG-YFDPLGLAADPEKLDTLK 239
Query: 216 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 247
+ EIK+ RLAM + F +QA TGKGP+ L
Sbjct: 240 LAEIKHSRLAMVAFLIFALQAAFTGKGPVSFL 271
>AT1G15820.1 | Symbols: LHCB6, CP24 | light harvesting complex
photosystem II subunit 6 | chr1:5446685-5447676 REVERSE
LENGTH=258
Length = 258
Score = 91.3 bits (225), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 94/208 (45%), Gaps = 50/208 (24%)
Query: 69 PSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVD 128
P +L G PGD+G+D GL DP R E+IHGRWAM LG V + W V
Sbjct: 70 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIF---VGQAWSGV- 125
Query: 129 FKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFR--------- 179
WF+AG+Q P+ + S ++LG Q+LLMG VE R
Sbjct: 126 ----AWFEAGAQ------------PDAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDS 169
Query: 180 -----INGLPGVGE------GNNLYPGGQYFDPLGLAD---------DPATFAELKVKEI 219
E G+ YPGG++FDPLGLA D LK+ EI
Sbjct: 170 QSVEWATPWSKTAENFANYTGDQGYPGGRFFDPLGLAGKNRDGVYEPDFEKLERLKLAEI 229
Query: 220 KNGRLAMFSMFGFFVQAIVTGKGPLENL 247
K+ RLAM +M F+ +A GK PL L
Sbjct: 230 KHSRLAMVAMLIFYFEA-GQGKTPLGAL 256
>AT3G54890.2 | Symbols: LHCA1 | photosystem I light harvesting
complex gene 1 | chr3:20339706-20340922 REVERSE
LENGTH=207
Length = 207
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 82/193 (42%), Gaps = 52/193 (26%)
Query: 69 PSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVL--EKWVR 126
P+YL G PGD+G+D GL P + + E+IH RWAML G + PE L WV+
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVK 114
Query: 127 VDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPGV 186
W G YLGNP V ++ +L + L +
Sbjct: 115 AQ----EW-----AALPGGQATYLGNP--VPWGTLPTILAIEFLAIAF------------ 151
Query: 187 GEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLE 245
ELKVKEIKNGRLA+ + GF V Q+ G GPLE
Sbjct: 152 --------------------------ELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 185
Query: 246 NLLDHLDDPVANN 258
NL HL DP NN
Sbjct: 186 NLATHLADPWHNN 198
>AT3G54890.4 | Symbols: LHCA1 | photosystem I light harvesting
complex gene 1 | chr3:20339881-20340922 REVERSE
LENGTH=213
Length = 213
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 77/158 (48%), Gaps = 19/158 (12%)
Query: 69 PSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVL--EKWVR 126
P+YL G PGD+G+D GL P + + E+IH RWAML G + PE L WV+
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVK 114
Query: 127 VDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFR-INGLPG 185
W G YLGNP V ++ +L + L + VE R + P
Sbjct: 115 AQ----EW-----AALPGGQATYLGNP--VPWGTLPTILAIEFLAIAFVEHQRSMEKDP- 162
Query: 186 VGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGR 223
YPGG FDPLG + DP ELKVKEIKNG+
Sbjct: 163 ---EKKKYPGGA-FDPLGYSKDPKKLEELKVKEIKNGK 196
>AT5G28450.1 | Symbols: | Chlorophyll A-B binding family protein |
chr5:10372978-10374190 REVERSE LENGTH=173
Length = 173
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 193 YPGGQYFDPLGLAD-DPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL 251
YPGG +FDPLG P EL+ KEIKNGRLAM ++ G + Q I TG GP++NL HL
Sbjct: 99 YPGGLWFDPLGWGSGSPTKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHL 158
Query: 252 DDP 254
DP
Sbjct: 159 ADP 161
>AT3G54890.3 | Symbols: LHCA1 | photosystem I light harvesting
complex gene 1 | chr3:20339961-20340922 REVERSE
LENGTH=164
Length = 164
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Query: 69 PSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVL--EKWVR 126
P+YL G PGD+G+D GL P + + E+IH RWAML G + PE L WV+
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVK 114
Query: 127 VDFKEPVWFKAGSQIFSEGGLDYLGNP 153
W G YLGNP
Sbjct: 115 AQ----EW-----AALPGGQATYLGNP 132