Miyakogusa Predicted Gene

Lj3g3v0679240.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0679240.2 Non Chatacterized Hit- tr|D7MEG1|D7MEG1_ARALL
Putative uncharacterized protein OS=Arabidopsis lyrata,52.27,3e-17,
,CUFF.41096.2
         (84 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G27390.1 | Symbols:  | unknown protein; INVOLVED IN: biologic...   106   3e-24

>AT4G27390.1 | Symbols:  | unknown protein; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
           growth stages; Has 30201 Blast hits to 17322 proteins in
           780 species: Archae - 12; Bacteria - 1396; Metazoa -
           17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
           Eukaryotes - 2996 (source: NCBI BLink). |
           chr4:13703417-13704655 REVERSE LENGTH=235
          Length = 235

 Score =  106 bits (265), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 50/87 (57%), Positives = 67/87 (77%), Gaps = 4/87 (4%)

Query: 1   MQGTCPNCGNDFQVFKSTLNDDLQLCPYCGQPFSVVGNEFVKDSVKFSNQSTTFGQAFNN 60
           +Q  CPNCGN+FQ+FKS ++D++QLCP+C QPFSVV ++FVK+ VKFSNQ+T FGQ  N 
Sbjct: 150 VQSNCPNCGNEFQIFKSAMDDEVQLCPFCTQPFSVVDDKFVKEPVKFSNQTTAFGQDLNG 209

Query: 61  FSRSSNEKDSGRA---IDVEAEIMDAD 84
           FS S  +K  G +   +D+EAE+ DAD
Sbjct: 210 FS-SKPKKGKGSSTAVVDIEAEVTDAD 235