Miyakogusa Predicted Gene

Lj3g3v0642580.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0642580.1 tr|Q6UP31|Q6UP31_CHLRE NADH:ubiquinone
oxidoreductase 18 kDa subunit OS=Chlamydomonas reinhardtii
GN,35.06,1e-17,NDUFA12,NADH:ubiquinone oxidoreductase, 17.2kDa
subunit; SUBFAMILY NOT NAMED,NULL; NADH-UBIQUINONE O,CUFF.41082.1
         (159 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G03100.1 | Symbols:  | NADH:ubiquinone oxidoreductase, 17.2kD...   257   2e-69
AT3G03100.2 | Symbols:  | NADH:ubiquinone oxidoreductase, 17.2kD...   255   9e-69

>AT3G03100.1 | Symbols:  | NADH:ubiquinone oxidoreductase, 17.2kDa
           subunit | chr3:705564-707578 REVERSE LENGTH=159
          Length = 159

 Score =  257 bits (657), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 116/150 (77%), Positives = 133/150 (88%)

Query: 3   SLVKSILNSVKEKGLGGFLRHLKDDGFMRCLPDGNLLQTKIHGIGARLVGVDKFGNKYYE 62
           ++ KS L +++EKGLGGF+R ++++GFMRCLPDGNLLQTKIH IGA LVGVDKFGNKYY+
Sbjct: 4   TVAKSALEAIREKGLGGFMRMIREEGFMRCLPDGNLLQTKIHNIGATLVGVDKFGNKYYQ 63

Query: 63  KIENTINGRHRWVEYAEKKRYNASQVPPEWHGWLHFITDHTGDELLLLKPKRYGVEHKEN 122
           K+ +T  GRHRWVEYA K RYNASQVP EWHGWLHFITDHTGDELL LKPKRYG+EHKEN
Sbjct: 64  KLGDTQYGRHRWVEYASKDRYNASQVPAEWHGWLHFITDHTGDELLSLKPKRYGLEHKEN 123

Query: 123 LSGEGEQFIYHSKGHALNPGQRNWTRYQPW 152
            SGEG+ +IYHSKGH LNPGQ+NWTRYQ W
Sbjct: 124 FSGEGDAYIYHSKGHTLNPGQKNWTRYQSW 153


>AT3G03100.2 | Symbols:  | NADH:ubiquinone oxidoreductase, 17.2kDa
           subunit | chr3:705564-707578 REVERSE LENGTH=159
          Length = 159

 Score =  255 bits (651), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 115/150 (76%), Positives = 132/150 (88%)

Query: 3   SLVKSILNSVKEKGLGGFLRHLKDDGFMRCLPDGNLLQTKIHGIGARLVGVDKFGNKYYE 62
           ++ KS L +++EKGLGGF+R ++++GFMRCLPDGNLLQTKIH IGA LVGVDKFGNKYY+
Sbjct: 4   TVAKSALEAIREKGLGGFMRMIREEGFMRCLPDGNLLQTKIHNIGATLVGVDKFGNKYYQ 63

Query: 63  KIENTINGRHRWVEYAEKKRYNASQVPPEWHGWLHFITDHTGDELLLLKPKRYGVEHKEN 122
           K+ +T  G HRWVEYA K RYNASQVP EWHGWLHFITDHTGDELL LKPKRYG+EHKEN
Sbjct: 64  KLGDTQYGMHRWVEYASKDRYNASQVPAEWHGWLHFITDHTGDELLSLKPKRYGLEHKEN 123

Query: 123 LSGEGEQFIYHSKGHALNPGQRNWTRYQPW 152
            SGEG+ +IYHSKGH LNPGQ+NWTRYQ W
Sbjct: 124 FSGEGDAYIYHSKGHTLNPGQKNWTRYQSW 153