Miyakogusa Predicted Gene

Lj3g3v0642550.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0642550.2 Non Chatacterized Hit- tr|J3LLI1|J3LLI1_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB03G1,58.21,6e-19,seg,NULL,CUFF.41063.2
         (126 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G17610.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   160   2e-40

>AT5G17610.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endomembrane
           system; EXPRESSED IN: 23 plant structures; EXPRESSED
           DURING: 15 growth stages; Has 30201 Blast hits to 17322
           proteins in 780 species: Archae - 12; Bacteria - 1396;
           Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
           0; Other Eukaryotes - 2996 (source: NCBI BLink). |
           chr5:5804011-5805045 FORWARD LENGTH=121
          Length = 121

 Score =  160 bits (406), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 74/94 (78%), Positives = 84/94 (89%)

Query: 31  AKSPHPISDAEVRQKKLQCYADIDSLLWGWQCKSSMIARENCALRCLSPACYEVIYQSDP 90
           +KSP PISD E+RQKK +CY DI+S LWGWQCKSS IA+ENCALRCLSP CY++IY+SDP
Sbjct: 28  SKSPRPISDVEIRQKKSECYGDIESGLWGWQCKSSAIAKENCALRCLSPVCYQLIYESDP 87

Query: 91  LEEGEKDFIRSQEYKYCMHKLSLGESIEGVRGSF 124
           LEEGEKD IRSQEYKYCM+K SLGES+EGVRG F
Sbjct: 88  LEEGEKDLIRSQEYKYCMYKSSLGESLEGVRGIF 121