Miyakogusa Predicted Gene

Lj3g3v0642480.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0642480.1 Non Chatacterized Hit- tr|K3ZY46|K3ZY46_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si031528,65.91,5e-19,Ribosomal_L18p,Ribosomal protein L18/L5; no
description,NULL; Translational machinery components,NUL,CUFF.41060.1
         (88 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G45020.1 | Symbols:  | Ribosomal L18p/L5e family protein | ch...   150   2e-37

>AT3G45020.1 | Symbols:  | Ribosomal L18p/L5e family protein |
          chr3:16469167-16469568 REVERSE LENGTH=133
          Length = 133

 Score =  150 bits (379), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 71/88 (80%), Positives = 81/88 (92%)

Query: 1  MTLMKRYVLRLFTSLKYITANVVDRNNGRIVATSSTVEHAMKESLECGRSCNAKAAAIVG 60
          MT++KRYVLRLF S+KYITANVVDRNNGRIV T+STVEH +K SLECGR+CNAKAAAIVG
Sbjct: 1  MTVLKRYVLRLFMSIKYITANVVDRNNGRIVTTASTVEHTIKNSLECGRTCNAKAAAIVG 60

Query: 61 EVLARRLKVEGLNEGEGRGIHVNVKKEV 88
          EVLA RLKVEGL +G+GRGIH +VKKE+
Sbjct: 61 EVLAMRLKVEGLQDGQGRGIHADVKKEI 88