Miyakogusa Predicted Gene

Lj3g3v0618200.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0618200.1 tr|G7LDH4|G7LDH4_MEDTR Retrograde Golgi transport
protein RGP1-like protein OS=Medicago truncatula G,85.53,0,seg,NULL;
Rgp1,Reduced growth phenotype protein 1; SUBFAMILY NOT NAMED,NULL;
REDUCED GROWTH PHENOTYP,CUFF.41110.1
         (530 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G50120.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   585   e-167

>AT1G50120.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 23 plant
           structures; EXPRESSED DURING: 13 growth stages; CONTAINS
           InterPro DOMAIN/s: Rgp1 (InterPro:IPR014848),
           Immunoglobulin E-set (InterPro:IPR014756); Has 144 Blast
           hits to 140 proteins in 61 species: Archae - 0; Bacteria
           - 0; Metazoa - 86; Fungi - 10; Plants - 39; Viruses - 0;
           Other Eukaryotes - 9 (source: NCBI BLink). |
           chr1:18562302-18566015 FORWARD LENGTH=532
          Length = 532

 Score =  585 bits (1508), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 299/541 (55%), Positives = 371/541 (68%), Gaps = 20/541 (3%)

Query: 1   MLQGRLSFFG-GGDSRLVDNNSSKGEPLVPTLKLETDKQVYRPGDPVVVTIQISNPSNGY 59
           ML  R SF G G  S + D+    G  + P+L ++TDK VYRPGD + VTI+++N  +  
Sbjct: 1   MLSSRFSFLGIGSSSEVNDSVGVSGSKIKPSLSVQTDKDVYRPGDSIFVTIEVANSHDNA 60

Query: 60  S---FLMERLSFEIKGIEKLDTQWFATQKPLPGSKQRRGEHVFLDCSCPILVANQIVNAG 116
           S    L+E+LSFE+KG+EKLD QWF+TQKP PGSK RRGEH+FLD S P L++NQI++ G
Sbjct: 61  SNPSILVEKLSFEVKGLEKLDIQWFSTQKPSPGSKGRRGEHIFLDSSTPSLISNQILSPG 120

Query: 117 TSKSYVVRTLLPSIIPPSYKGSNIRYLYYVKSAVTGGWLILENGQSHAETSNDVTDLDVR 176
              + +VR +LP IIPPSYKG+ +RYLYY+KS + G W+ LEN Q + +++ D  +++ R
Sbjct: 121 AKMTLMVRAILPQIIPPSYKGATLRYLYYIKSTLCGRWMALENSQFYKDSTQDFIEVETR 180

Query: 177 IPLQVWINQKSSGFPTDED----IVPLTTVQPDIFWKEMDGDADWVRANDFYDGIEEGYX 232
           IPLQVW+ QK++G   +ED    IVP +T+Q +I+WKEMDGD++W RAND YD  E+GY 
Sbjct: 181 IPLQVWVIQKNNGLLLEEDQIDGIVPTSTIQTEIYWKEMDGDSEWTRANDAYDSGEDGYD 240

Query: 233 XXXXXXXXXXXYNPSKENLHXXXXXXXXXXXXXXXXXXXXXXXXEIHRTSLSSNMALPRL 292
                      Y P+K NL+                        E  R   S  M L +L
Sbjct: 241 SSRDEISSVSSY-PNKSNLNRTFGSSLSLNSGPRLSMKDTSYVEE--RVGSSPKMMLSQL 297

Query: 293 SVAVS--DPGADVLSTQKSFGIVSPSDQQQFRKPFSADDDAGVSSSPEAGA-ESLSSEGF 349
           S AV   D G DV S  KS   V PS Q +        + AG S SP AGA E + SEGF
Sbjct: 298 SAAVVSYDSGTDVSSPHKSSNSVVPSQQPK------QTNGAGASMSPGAGAREPVPSEGF 351

Query: 350 IRGKSYNIRLDDQVLLKFSPKNSDSTHYFSDVIGGTLTFFHEEGARRCLEISVTLETSET 409
            RG+SYNIR+DDQVLL+FSPKN+DST+YFSD IGGTLTFFHEEG RRCLE+SVTLET ET
Sbjct: 352 TRGRSYNIRMDDQVLLRFSPKNADSTYYFSDTIGGTLTFFHEEGTRRCLEVSVTLETLET 411

Query: 410 INRRFVHPSRRNSPTITKVQSDHHEVVADLVQTSFLFSVPMDGPMSFSTPHVSVQWVLRF 469
           INRRFVHPSRRNSPT+TKVQSDHHEVVADL+QTSFLFS+P DGPMSFSTP VSVQW+LRF
Sbjct: 412 INRRFVHPSRRNSPTLTKVQSDHHEVVADLIQTSFLFSIPTDGPMSFSTPRVSVQWILRF 471

Query: 470 EFFTTPKHVDWSKYEHPLLIEGRERTEWVLPITVHXXXXXXXXXXXXXEKLFSLDPLWVQ 529
           EF TTPK VD S+YEHPLL+  RE++EWVLPITVH             +KLF L+P W++
Sbjct: 472 EFLTTPKSVDLSRYEHPLLVPEREKSEWVLPITVHAPPPRTSGAQNRGDKLFGLEPSWIR 531

Query: 530 N 530
           +
Sbjct: 532 S 532