Miyakogusa Predicted Gene
- Lj3g3v0618130.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0618130.1 tr|Q6ZGY7|Q6ZGY7_ORYSJ Os02g0689500 protein
OS=Oryza sativa subsp. japonica GN=OJ1743_B12.24 PE=2
SV,32.91,4e-17,seg,NULL,CUFF.41050.1
(285 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G44600.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 89 3e-18
AT3G60200.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 66 2e-11
>AT2G44600.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: plasma membrane;
BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT3G60200.1); Has 56 Blast hits to 55
proteins in 11 species: Archae - 0; Bacteria - 0;
Metazoa - 2; Fungi - 0; Plants - 52; Viruses - 0; Other
Eukaryotes - 2 (source: NCBI BLink). |
chr2:18408845-18409786 FORWARD LENGTH=313
Length = 313
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 89/319 (27%), Positives = 125/319 (39%), Gaps = 40/319 (12%)
Query: 1 MRCKKHLPDLTSTLGVCASCLRERLEPLAEAQAQSPHPATGKSDXXXXXXXXXXXXXXXX 60
MRCK+H D +S++GVCASCLRERL LA + A S +
Sbjct: 1 MRCKRHTVDFSSSIGVCASCLRERLFTLAVSTAASENDDNDHRHSRISPPPLLFPRSVSP 60
Query: 61 YVT-----------XXXXXXXXXXXXLFHSVPEVGQGFSPACDXXXXXXXSKKRIGRFWI 109
YV F + P+V S + KK+
Sbjct: 61 YVAPRKSDAGTGTGAGGRDSVASSNNRFFATPQVVVQSSSSEKVFESDRSFKKKKSGLSR 120
Query: 110 LSSLFRPRSNKTTEEEDXXXXXXXXXXXXXXXXXXXXXTILPARRQNDQRSCRRQSDRGL 169
SS FR RS+ D + + + R ++QS
Sbjct: 121 FSSFFRTRSDDYDSRRDSCDASTVFSQPSSATTSRSWFSKVISVRS------KKQSTTNT 174
Query: 170 SPVETVTVTQTESPKIDG--------RDRSPPGCSS------ESSPQRRHQTPTVA---- 211
+E + ++++ + R SP G S+ E SP R +TP +
Sbjct: 175 CYIEDLIASESDHHHHNQNRPRQRYCRGMSPAGDSTTNDESVEESPGRLRRTPVMGTPGR 234
Query: 212 RRSRFCPAGKSLTNIAFCLSPLVRASPN--RRWGHKGLAQ-ELSGGLGGPQ--HISTAVS 266
+++ G+S++ +AFCLSPLVRA PN W K SG L P H+STA S
Sbjct: 235 KKTATIGIGRSVSGMAFCLSPLVRAKPNCSSNWKAKFPPDFGYSGELKSPAKPHLSTAAS 294
Query: 267 YCANRSRKLADFGRVAHNR 285
+C NRS+KL D GRV H R
Sbjct: 295 FCGNRSKKLVDLGRVDHRR 313
>AT3G60200.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G44600.1); Has 60 Blast hits to 60 proteins in
12 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi
- 0; Plants - 51; Viruses - 0; Other Eukaryotes - 1
(source: NCBI BLink). | chr3:22249320-22250237 FORWARD
LENGTH=305
Length = 305
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 64/126 (50%), Gaps = 22/126 (17%)
Query: 167 RGLSPVETVTVTQTESPKIDGRDRSPPGCSSESSPQRRHQTPTVARRSRFCPAGKSLTNI 226
RG+SPV Q+ + I+ R+P T T RR GKS++ +
Sbjct: 195 RGMSPVRDTEPEQS-AESIEELRRTP-------------ATKTPGRRKIAMGIGKSMSGM 240
Query: 227 AFCLSPLVRASPNRRWGHK-------GLAQELSGGLGGPQHISTAVSYCANRSRKLADFG 279
AFCLSPLVRASPN + K G + E++ P HIS A S+CANRS+KL D G
Sbjct: 241 AFCLSPLVRASPNCPFKRKMRFPSEFGNSGEVTAVPEKP-HISAAASFCANRSKKLVDLG 299
Query: 280 RVAHNR 285
RV R
Sbjct: 300 RVDRRR 305