Miyakogusa Predicted Gene

Lj3g3v0599570.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0599570.1 Non Chatacterized Hit- tr|B9RUR2|B9RUR2_RICCO 60S
ribosomal protein L37a, putative OS=Ricinus
commun,85.29,3.00004e-41,no description,Ribosomal protein L37ae/L37e,
N-terminal; Ribosomal_L37ae,Ribosomal protein L37ae; Zn,CUFF.41025.1
         (132 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G60245.1 | Symbols:  | Zinc-binding ribosomal protein family ...   166   3e-42
AT3G10950.1 | Symbols:  | Zinc-binding ribosomal protein family ...   166   4e-42

>AT3G60245.1 | Symbols:  | Zinc-binding ribosomal protein family
           protein | chr3:22268803-22269750 FORWARD LENGTH=92
          Length = 92

 Score =  166 bits (421), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 79/85 (92%), Positives = 82/85 (96%)

Query: 48  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDC 107
           M KRTKK GIVGKYGTRYGAS+RKQIKKMEVSQHSK+FCEFCGKY VKRKAVGIWGCKDC
Sbjct: 1   MAKRTKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDC 60

Query: 108 GKVKAGGAYTLNTASAVTVRSTIRR 132
           GKVKAGGAYT+NTASAVTVRSTIRR
Sbjct: 61  GKVKAGGAYTMNTASAVTVRSTIRR 85


>AT3G10950.1 | Symbols:  | Zinc-binding ribosomal protein family
           protein | chr3:3423893-3424566 FORWARD LENGTH=92
          Length = 92

 Score =  166 bits (420), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 79/85 (92%), Positives = 83/85 (97%)

Query: 48  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDC 107
           MTKRTKKA IVGKYGTRYGASLRKQIKKMEVSQH+K+FCEFCGKY+VKRK VGIWGCKDC
Sbjct: 1   MTKRTKKARIVGKYGTRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDC 60

Query: 108 GKVKAGGAYTLNTASAVTVRSTIRR 132
           GKVKAGGAYT+NTASAVTVRSTIRR
Sbjct: 61  GKVKAGGAYTMNTASAVTVRSTIRR 85