Miyakogusa Predicted Gene

Lj3g3v0593220.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0593220.1 Non Chatacterized Hit- tr|D8RQG8|D8RQG8_SELML
Putative uncharacterized protein OS=Selaginella moelle,42.61,7e-16,no
description,NULL; SUBFAMILY NOT NAMED,NULL; PAX6 NEIGHBOR PROTEIN
(PAXNEB),NULL; seg,NULL; PAXNEB,CUFF.40998.1
         (168 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G11220.2 | Symbols: ELO1 | Paxneb protein-related | chr3:3513...   192   1e-49
AT3G11220.1 | Symbols: ELO1 | Paxneb protein-related | chr3:3513...   192   1e-49

>AT3G11220.2 | Symbols: ELO1 | Paxneb protein-related |
           chr3:3513830-3515990 REVERSE LENGTH=373
          Length = 373

 Score =  192 bits (487), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 99/151 (65%), Positives = 112/151 (74%), Gaps = 9/151 (5%)

Query: 17  TATSQNPGLKHGPNGTTFISSGIPDLDKILGGGFSLGSLVMIMEDAEAPHHMLLLRNFMS 76
            ++ Q PGLK GPNGT FISSGI DLD+ILGGG+ LGSLVM+MED EAPHHM LLR +MS
Sbjct: 19  VSSPQIPGLKSGPNGTAFISSGIRDLDRILGGGYPLGSLVMVMEDPEAPHHMDLLRTYMS 78

Query: 77  QGLVHRQPLLYASASRDPKGFLGTLPSPGSSKEDK--SRDLGHEKDLRIAWQYKKYFGEP 134
           QGLV+ QPLLYAS S+DPKGFLGTLP P SSKEDK  + D    + LRIAWQY+KY  E 
Sbjct: 79  QGLVNNQPLLYASPSKDPKGFLGTLPHPASSKEDKPTAPDPDQGESLRIAWQYRKYL-EN 137

Query: 135 QLNVNSNNGGQHDYCNDFDLRKPLDRHFFGG 165
           Q N         DY NDFD+RKPL+R F  G
Sbjct: 138 QKN------AIDDYSNDFDMRKPLERQFLSG 162


>AT3G11220.1 | Symbols: ELO1 | Paxneb protein-related |
           chr3:3513830-3515990 REVERSE LENGTH=355
          Length = 355

 Score =  192 bits (487), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 99/151 (65%), Positives = 112/151 (74%), Gaps = 9/151 (5%)

Query: 17  TATSQNPGLKHGPNGTTFISSGIPDLDKILGGGFSLGSLVMIMEDAEAPHHMLLLRNFMS 76
            ++ Q PGLK GPNGT FISSGI DLD+ILGGG+ LGSLVM+MED EAPHHM LLR +MS
Sbjct: 19  VSSPQIPGLKSGPNGTAFISSGIRDLDRILGGGYPLGSLVMVMEDPEAPHHMDLLRTYMS 78

Query: 77  QGLVHRQPLLYASASRDPKGFLGTLPSPGSSKEDK--SRDLGHEKDLRIAWQYKKYFGEP 134
           QGLV+ QPLLYAS S+DPKGFLGTLP P SSKEDK  + D    + LRIAWQY+KY  E 
Sbjct: 79  QGLVNNQPLLYASPSKDPKGFLGTLPHPASSKEDKPTAPDPDQGESLRIAWQYRKYL-EN 137

Query: 135 QLNVNSNNGGQHDYCNDFDLRKPLDRHFFGG 165
           Q N         DY NDFD+RKPL+R F  G
Sbjct: 138 QKN------AIDDYSNDFDMRKPLERQFLSG 162