Miyakogusa Predicted Gene

Lj3g3v0582180.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0582180.1 tr|B9MUQ8|B9MUQ8_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_589877 PE=3 SV=1,83.02,9e-16,MUTS
HOMOLOG 4, MSH4,NULL; DNA MISMATCH REPAIR MUTS RELATED PROTEINS,NULL;
no description,NULL; DNA ,gene.g45678.t1.1
         (397 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G17380.1 | Symbols: MSH4, ATMSH4 | MUTS-like protein 4 | chr4...   402   e-112

>AT4G17380.1 | Symbols: MSH4, ATMSH4 | MUTS-like protein 4 |
           chr4:9708742-9714068 FORWARD LENGTH=792
          Length = 792

 Score =  402 bits (1032), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 197/310 (63%), Positives = 225/310 (72%), Gaps = 17/310 (5%)

Query: 17  QPLKDIETISARLDCLDELMSNEQLFFALCQVLRKFPKETDRVLCHFCFKPKKDTIEALA 76
           QPLKDIETI+ RLDCLDELMSNEQLFF L QVLRKFPKETDRVLCHFCFKPKK T   + 
Sbjct: 217 QPLKDIETINTRLDCLDELMSNEQLFFGLSQVLRKFPKETDRVLCHFCFKPKKVTEAVIG 276

Query: 77  VDRAKKSQMLVSSVIXXXXXXXXXXXXSKVLKDAKSSLLSNIYKSVCANEKYDRIKERIG 136
            +  +KSQ ++SS+I            +KVLKDAK  LL+N+YKSVC N++Y  I+++IG
Sbjct: 277 FENTRKSQNMISSIILLKTALDALPILAKVLKDAKCFLLANVYKSVCENDRYASIRKKIG 336

Query: 137 EIIDEDVLHARVPFVACTQQCFAVKAGIDGLLDISRRSFCETSEAIHNLANNYREEFKLP 196
           E+ID+DVLHARVPFVA TQQCFA+KAGIDG LDI+RR+FC+TSEAIHNLA+ YREEF LP
Sbjct: 337 EVIDDDVLHARVPFVARTQQCFALKAGIDGFLDIARRTFCDTSEAIHNLASKYREEFNLP 396

Query: 197 NLKLIFKNRQGFHFVIPQKNVQGKLPRKFIQ-----------------LNARNKSAAAEC 239
           NLKL F NRQGF F IPQK VQGKLP KF Q                 LN RNKSAA EC
Sbjct: 397 NLKLPFNNRQGFFFRIPQKEVQGKLPNKFTQVVKHGKNIHCSSLELASLNVRNKSAAGEC 456

Query: 240 YTRTEVCLEELMDAIRENVSVXXXXXXXXXXXDMIVNSFAHMISTKPVDRYTRPEFTGNT 299
           + RTE CLE LMDAIRE++S            DMIVNSFAH ISTKPVDRY+RPE T + 
Sbjct: 457 FIRTETCLEALMDAIREDISALTLLAEVLCLLDMIVNSFAHTISTKPVDRYSRPELTDSG 516

Query: 300 PFDLFTPEGP 309
           P  +     P
Sbjct: 517 PLAIDAGRHP 526



 Score =  124 bits (311), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 56/91 (61%), Positives = 73/91 (80%)

Query: 307 EGPKHIPHYGLLLAEVAGLPSPVIENARMITSRISEKEMRRMKVNCLQYHSIQRAYHVAQ 366
           +G  H+PHYGLLLAEVAGLPS VI+ AR+IT RI++KE +R+++NC ++H I R Y VAQ
Sbjct: 702 DGTLHVPHYGLLLAEVAGLPSTVIDTARIITKRITDKENKRIELNCGKHHEIHRIYRVAQ 761

Query: 367 RLLCLKYSNQDEDTIRQALRNLKETCLNHKL 397
           RL+CLKYS Q ED+IRQAL+NL E+    +L
Sbjct: 762 RLICLKYSRQTEDSIRQALQNLNESFTEERL 792