Miyakogusa Predicted Gene

Lj3g3v0579150.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0579150.1 tr|A9S1G4|A9S1G4_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_162323,34.97,1e-16,seg,NULL,CUFF.40990.1
         (496 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G44760.1 | Symbols:  | Domain of unknown function (DUF3598) |...   560   e-160

>AT2G44760.1 | Symbols:  | Domain of unknown function (DUF3598) |
           chr2:18452937-18454785 REVERSE LENGTH=500
          Length = 500

 Score =  560 bits (1444), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 288/457 (63%), Positives = 344/457 (75%), Gaps = 24/457 (5%)

Query: 48  RVIAQAQKPNHNNKR--GPKQGVRVKGNKENVWSFDNELAKMAAXXXXXXXXXXXXXXMV 105
           +++AQ  + N  N R  G K  V +KGNKEN+WS DNE+A+                 + 
Sbjct: 57  KIVAQGSRLNDGNSRPAGNKGKVSLKGNKENIWSVDNEMAE-KDKRKVKPKGRKSGKRLG 115

Query: 106 KTKRGKGGRVTVTGAMLVEVETVLQTQEPVIKPAWNTFASSLSGIWKGVGAVFSPITAEM 165
             ++GK GRV V+G ML+E ETVLQTQEPVIKP W TFASS+SGIWKGVGAVFSPIT EM
Sbjct: 116 GGRKGKFGRVLVSGTMLIESETVLQTQEPVIKPVWRTFASSVSGIWKGVGAVFSPITGEM 175

Query: 166 EPMEIGRKNENLYDCYTLTRIEEVPSLS--GDRTSQIQRTVNWVTLNPYGETQHIEGSKT 223
           EP+EIG+KNE+LYDCYTL++IE +PS S   +  S+IQR +NWVTLNP+GE         
Sbjct: 176 EPIEIGKKNESLYDCYTLSKIEALPSPSSGANTESEIQRKINWVTLNPHGECSE------ 229

Query: 224 AKDGTNDLNALTFANENNV---LPTFGSFDFERSDVMEEDVMRCEPGLVYFEDGSYSRGP 280
           +KD         F +++ V   LP F SF+ + SDVMEED M   PGLVYFEDGSYSRGP
Sbjct: 230 SKDEV-------FVDQSGVDSRLPKFESFNLKASDVMEEDSMVDAPGLVYFEDGSYSRGP 282

Query: 281 VNIPVGEYDDSNYYITPTFKFEQCLVKGCHKRIRVVHTIEFINGGSDIQIMRVAAYEETW 340
           V IPVGE  +SNYY+TPTFKFEQCLVKGCHKR+RVVHTIEF NGG+DIQIMRV  YEE W
Sbjct: 283 VTIPVGEMSESNYYLTPTFKFEQCLVKGCHKRLRVVHTIEFANGGADIQIMRVGVYEELW 342

Query: 341 DSPANVSDQSDME--FDLEPFSQRKRTKPSELTGSWKVFEVSATPVYSEDTKVEE-GNDA 397
            SP+N  +QSD +   +L+PFSQRKRT+PSELTGSWKVFEV+ATP+Y E+ + E+ G   
Sbjct: 343 VSPSNYEEQSDNDAPLELKPFSQRKRTQPSELTGSWKVFEVNATPLYGEEAEFEQPGEST 402

Query: 398 PYVYLCTENLKKRSFPESTNYFGEEERLDMQDVTMLWLPGGITCYVDVNKDGVLCIGVGW 457
           P VYLCTE LK+R+ PE+   FGEEE +DMQDV+++WLPGG++ YVDV KDGVLCIGVGW
Sbjct: 403 PVVYLCTEALKRRNLPETLVSFGEEEMIDMQDVSVMWLPGGVSAYVDVKKDGVLCIGVGW 462

Query: 458 YSDEGINLVMERDYGLDGKLKEVRSKCEVKRRWSNPP 494
           YSDEGINLVMERDYGLDG LKEVRSK E+KRRW+  P
Sbjct: 463 YSDEGINLVMERDYGLDGNLKEVRSKSEMKRRWTEEP 499