Miyakogusa Predicted Gene

Lj3g3v0566080.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0566080.2 Non Chatacterized Hit- tr|H3GRN7|H3GRN7_PHYRM
Uncharacterized protein OS=Phytophthora ramorum
GN=fge,26.88,2e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
CRT-like,Chloroquine resistance transporter-related,CUFF.40988.2
         (429 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G24460.2 | Symbols: CLT2 | CRT (chloroquine-resistance transp...   355   2e-98
AT4G24460.1 | Symbols: CLT2 | CRT (chloroquine-resistance transp...   355   2e-98
AT5G19380.1 | Symbols: CLT1 | CRT (chloroquine-resistance transp...   270   1e-72
AT5G12170.2 | Symbols: CLT3 | CRT (chloroquine-resistance transp...   267   1e-71
AT5G19380.2 | Symbols: CLT1 | CRT (chloroquine-resistance transp...   226   3e-59

>AT4G24460.2 | Symbols: CLT2 | CRT (chloroquine-resistance
           transporter)-like transporter 2 | chr4:12642888-12645310
           FORWARD LENGTH=431
          Length = 431

 Score =  355 bits (912), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 190/296 (64%), Positives = 214/296 (72%)

Query: 107 NRVLYKLALVPMSDYPFFLAQLTTFGYVAVYFSILYIRYRLGIVTNEMLAIPKWRFLIIG 166
           NRVLYKLALVPM  YPFF+AQLTTFGYV +YF+ILY R RLGIVTNEM+ +PKWRF IIG
Sbjct: 108 NRVLYKLALVPMKQYPFFMAQLTTFGYVLIYFTILYTRRRLGIVTNEMMDVPKWRFAIIG 167

Query: 167 FLEALGVASGMSAAVMLPGPVIPILNQTYLVWQLMFSTLLLRRRYSINQIAGCLLVAAGV 226
           FLEALGVA+GM+AA MLPGPVIPILNQTYLVWQL+F+ L+L RR+ +NQIAGCLLVA GV
Sbjct: 168 FLEALGVATGMAAAAMLPGPVIPILNQTYLVWQLLFALLILGRRFLLNQIAGCLLVAVGV 227

Query: 227 LMAVTSGSNTGQMLSKVEFFWPALMIVSAAFQAGASIIKEFVFIDSITRLKHKSLDIFVV 286
           ++AV+SGS     LS + F WPA+++ SAAFQAGASIIKEFVF D+  RL+ KSLDIFVV
Sbjct: 228 VVAVSSGSGADTTLSGIGFLWPAVLVASAAFQAGASIIKEFVFNDAAKRLEGKSLDIFVV 287

Query: 287 NSFGSGXXXXXXXXXXXXXXXXKGIPFVQLPSYLKSGAGCFLNIGADTSSCAGAPLLPLL 346
           NSFGSG                KGIPF  LPSYLK GAGCF N GA  S C GAP+LPLL
Sbjct: 288 NSFGSGFQALFVFLLLPFLSNLKGIPFASLPSYLKDGAGCFFNTGAKISGCDGAPILPLL 347

Query: 347 YIVTNLAFNIXXXXXXXXXXXXXXXXXXXXXXXXXXYILSLPLPYLPEATSLSPFF 402
           YI TNLAFNI                          YI+S PLPYLP  +SLS  F
Sbjct: 348 YISTNLAFNISLLHLVKISSAIVSSLTMMLSVPLAVYIMSKPLPYLPGGSSLSSNF 403


>AT4G24460.1 | Symbols: CLT2 | CRT (chloroquine-resistance
           transporter)-like transporter 2 | chr4:12642888-12645310
           FORWARD LENGTH=431
          Length = 431

 Score =  355 bits (912), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 190/296 (64%), Positives = 214/296 (72%)

Query: 107 NRVLYKLALVPMSDYPFFLAQLTTFGYVAVYFSILYIRYRLGIVTNEMLAIPKWRFLIIG 166
           NRVLYKLALVPM  YPFF+AQLTTFGYV +YF+ILY R RLGIVTNEM+ +PKWRF IIG
Sbjct: 108 NRVLYKLALVPMKQYPFFMAQLTTFGYVLIYFTILYTRRRLGIVTNEMMDVPKWRFAIIG 167

Query: 167 FLEALGVASGMSAAVMLPGPVIPILNQTYLVWQLMFSTLLLRRRYSINQIAGCLLVAAGV 226
           FLEALGVA+GM+AA MLPGPVIPILNQTYLVWQL+F+ L+L RR+ +NQIAGCLLVA GV
Sbjct: 168 FLEALGVATGMAAAAMLPGPVIPILNQTYLVWQLLFALLILGRRFLLNQIAGCLLVAVGV 227

Query: 227 LMAVTSGSNTGQMLSKVEFFWPALMIVSAAFQAGASIIKEFVFIDSITRLKHKSLDIFVV 286
           ++AV+SGS     LS + F WPA+++ SAAFQAGASIIKEFVF D+  RL+ KSLDIFVV
Sbjct: 228 VVAVSSGSGADTTLSGIGFLWPAVLVASAAFQAGASIIKEFVFNDAAKRLEGKSLDIFVV 287

Query: 287 NSFGSGXXXXXXXXXXXXXXXXKGIPFVQLPSYLKSGAGCFLNIGADTSSCAGAPLLPLL 346
           NSFGSG                KGIPF  LPSYLK GAGCF N GA  S C GAP+LPLL
Sbjct: 288 NSFGSGFQALFVFLLLPFLSNLKGIPFASLPSYLKDGAGCFFNTGAKISGCDGAPILPLL 347

Query: 347 YIVTNLAFNIXXXXXXXXXXXXXXXXXXXXXXXXXXYILSLPLPYLPEATSLSPFF 402
           YI TNLAFNI                          YI+S PLPYLP  +SLS  F
Sbjct: 348 YISTNLAFNISLLHLVKISSAIVSSLTMMLSVPLAVYIMSKPLPYLPGGSSLSSNF 403


>AT5G19380.1 | Symbols: CLT1 | CRT (chloroquine-resistance
           transporter)-like transporter 1 | chr5:6527017-6530445
           REVERSE LENGTH=447
          Length = 447

 Score =  270 bits (690), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 145/292 (49%), Positives = 186/292 (63%)

Query: 107 NRVLYKLALVPMSDYPFFLAQLTTFGYVAVYFSILYIRYRLGIVTNEMLAIPKWRFLIIG 166
           NRVLYKLAL+P+  YPFFLAQL+TFGYVAVYFSILY RYR GIVT EML++PK  FLI+G
Sbjct: 119 NRVLYKLALIPLKQYPFFLAQLSTFGYVAVYFSILYFRYRAGIVTKEMLSVPKLPFLIVG 178

Query: 167 FLEALGVASGMSAAVMLPGPVIPILNQTYLVWQLMFSTLLLRRRYSINQIAGCLLVAAGV 226
            LE+L +A+GM+AA  L GP   +L+QT+LVWQ++FS + L RRY INQI GC LVA GV
Sbjct: 179 VLESLALAAGMAAASNLSGPSTTVLSQTFLVWQILFSIIFLGRRYRINQILGCTLVAFGV 238

Query: 227 LMAVTSGSNTGQMLSKVEFFWPALMIVSAAFQAGASIIKEFVFIDSITRLKHKSLDIFVV 286
           +++V SGS            W  LM+ S   Q   +++KE +F+DS  RLK  SLD+FVV
Sbjct: 239 IVSVASGSGAAHSFKDTGILWSLLMVFSFLLQGADTVMKEVIFLDSKKRLKGASLDLFVV 298

Query: 287 NSFGSGXXXXXXXXXXXXXXXXKGIPFVQLPSYLKSGAGCFLNIGADTSSCAGAPLLPLL 346
           NS+GS                  GIPF QLPSY++ G  CFLNIG+  + C GAPLLP++
Sbjct: 299 NSYGSIFQVICIALLLPFLSKLWGIPFNQLPSYIRDGGACFLNIGSRITGCEGAPLLPVM 358

Query: 347 YIVTNLAFNIXXXXXXXXXXXXXXXXXXXXXXXXXXYILSLPLPYLPEATSL 398
           +++ N+A+NI                          Y  +LPLPYL  A++L
Sbjct: 359 FVMMNMAYNISLLRLIKISSAVVSSLASTVSVPIAVYCFTLPLPYLGVASTL 410


>AT5G12170.2 | Symbols: CLT3 | CRT (chloroquine-resistance
           transporter)-like transporter 3 | chr5:3931649-3934961
           FORWARD LENGTH=452
          Length = 452

 Score =  267 bits (682), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 149/323 (46%), Positives = 193/323 (59%)

Query: 107 NRVLYKLALVPMSDYPFFLAQLTTFGYVAVYFSILYIRYRLGIVTNEMLAIPKWRFLIIG 166
           NRV+YKLALVP+ +YPFFLAQL+TFGYVAVY++ILY RYR G VT+ ML++PK  FLI+G
Sbjct: 121 NRVMYKLALVPLKEYPFFLAQLSTFGYVAVYYTILYFRYRAGTVTDAMLSVPKSPFLIVG 180

Query: 167 FLEALGVASGMSAAVMLPGPVIPILNQTYLVWQLMFSTLLLRRRYSINQIAGCLLVAAGV 226
            LEAL  A+GM+AA  L GP   +L+QT+LVWQ+ FS + L RRYS+NQI GC LVA GV
Sbjct: 181 ILEALAAAAGMAAAANLSGPSTTVLSQTFLVWQIFFSIIFLGRRYSVNQILGCTLVALGV 240

Query: 227 LMAVTSGSNTGQMLSKVEFFWPALMIVSAAFQAGASIIKEFVFIDSITRLKHKSLDIFVV 286
           +++V SGS     L++    W  LM++S   Q   +++KE +FIDS  RLK  SLD+F+V
Sbjct: 241 IVSVASGSGAAHSLNEAGVLWILLMVLSFLLQGAGTVLKEVIFIDSQRRLKGASLDLFIV 300

Query: 287 NSFGSGXXXXXXXXXXXXXXXXKGIPFVQLPSYLKSGAGCFLNIGADTSSCAGAPLLPLL 346
           NS+GS                  GIPF QL +YLK GA CFLN G  T  C GAP LPLL
Sbjct: 301 NSYGSAFQAICIALLLPFLSKLWGIPFNQLGTYLKDGAVCFLNNGTITKGCDGAPFLPLL 360

Query: 347 YIVTNLAFNIXXXXXXXXXXXXXXXXXXXXXXXXXXYILSLPLPYLPEATSLSPFFXXXX 406
           +++ N+ +NI                          ++ ++PLPYL  A+SL   F    
Sbjct: 361 FVIMNIGYNIALLRLLKISSAVVSCLASTVSVPIAVFLFTMPLPYLGVASSLPKGFMGGT 420

Query: 407 XXXXXXXXXXNTTRPARNSSEID 429
                     + T    NSS  D
Sbjct: 421 IILVLGMILYSWTPHGANSSHTD 443


>AT5G19380.2 | Symbols: CLT1 | CRT (chloroquine-resistance
           transporter)-like transporter 1 | chr5:6527017-6530445
           REVERSE LENGTH=507
          Length = 507

 Score =  226 bits (575), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 124/266 (46%), Positives = 162/266 (60%)

Query: 133 YVAVYFSILYIRYRLGIVTNEMLAIPKWRFLIIGFLEALGVASGMSAAVMLPGPVIPILN 192
           YVAVYFSILY RYR GIVT EML++PK  FLI+G LE+L +A+GM+AA  L GP   +L+
Sbjct: 205 YVAVYFSILYFRYRAGIVTKEMLSVPKLPFLIVGVLESLALAAGMAAASNLSGPSTTVLS 264

Query: 193 QTYLVWQLMFSTLLLRRRYSINQIAGCLLVAAGVLMAVTSGSNTGQMLSKVEFFWPALMI 252
           QT+LVWQ++FS + L RRY INQI GC LVA GV+++V SGS            W  LM+
Sbjct: 265 QTFLVWQILFSIIFLGRRYRINQILGCTLVAFGVIVSVASGSGAAHSFKDTGILWSLLMV 324

Query: 253 VSAAFQAGASIIKEFVFIDSITRLKHKSLDIFVVNSFGSGXXXXXXXXXXXXXXXXKGIP 312
            S   Q   +++KE +F+DS  RLK  SLD+FVVNS+GS                  GIP
Sbjct: 325 FSFLLQGADTVMKEVIFLDSKKRLKGASLDLFVVNSYGSIFQVICIALLLPFLSKLWGIP 384

Query: 313 FVQLPSYLKSGAGCFLNIGADTSSCAGAPLLPLLYIVTNLAFNIXXXXXXXXXXXXXXXX 372
           F QLPSY++ G  CFLNIG+  + C GAPLLP+++++ N+A+NI                
Sbjct: 385 FNQLPSYIRDGGACFLNIGSRITGCEGAPLLPVMFVMMNMAYNISLLRLIKISSAVVSSL 444

Query: 373 XXXXXXXXXXYILSLPLPYLPEATSL 398
                     Y  +LPLPYL  A++L
Sbjct: 445 ASTVSVPIAVYCFTLPLPYLGVASTL 470