Miyakogusa Predicted Gene

Lj3g3v0566030.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0566030.1 Non Chatacterized Hit- tr|Q9AYE2|Q9AYE2_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,59.68,0.000000002,seg,NULL; coiled-coil,NULL; Apt1,FMP27,
C-terminal; SUBFAMILY NOT NAMED,NULL; ANTIGEN
MLAA-22-RELAT,CUFF.40981.1
         (187 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G58250.2 | Symbols: SAB | Golgi-body localisation protein dom...   228   2e-60
AT1G58250.1 | Symbols: SAB | Golgi-body localisation protein dom...   228   2e-60
AT5G49680.2 | Symbols:  | Golgi-body localisation protein domain...   181   2e-46

>AT1G58250.2 | Symbols: SAB | Golgi-body localisation protein domain
            ;RNA pol II promoter Fmp27 protein domain |
            chr1:21587317-21601373 REVERSE LENGTH=2655
          Length = 2655

 Score =  228 bits (581), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 125/187 (66%), Positives = 133/187 (71%), Gaps = 1/187 (0%)

Query: 1    MTSRQFQVMLDVLTNLLFARLPKPRKSSLSFPAXXXXXXXXXXXXXXXXXXXXXXLAKIN 60
            MTSRQFQVMLDVLTNLLFARLPKPRKSSL  P                       LAKIN
Sbjct: 1998 MTSRQFQVMLDVLTNLLFARLPKPRKSSLQCPTEDEDVEEEADEVVPYGVEEVE-LAKIN 2056

Query: 61   XXXXXXXXXXXXDDIRELSLWCDPSTDLHPEKESDLWMINGGRSMLIQGLKRELLSAQKS 120
                        DDIR+LS   D   D H E+E +LWMI+  RS+L+QGLK+EL  AQKS
Sbjct: 2057 LEEKERERKLLLDDIRKLSPCSDNMDDTHIEREGELWMISTRRSILVQGLKKELTYAQKS 2116

Query: 121  RKAASVSLRTALQKAAQLRLTEKEKNKSPSYAMRISLQINKVVWSMLVDGKSFAEAEIND 180
            RKAAS SLR ALQKAAQLR+ EKEKNKSPSYAM ISLQINKVVWSMLVDGKSFAEAEIND
Sbjct: 2117 RKAASASLRMALQKAAQLRIMEKEKNKSPSYAMCISLQINKVVWSMLVDGKSFAEAEIND 2176

Query: 181  MIYDFDR 187
            MIYDFDR
Sbjct: 2177 MIYDFDR 2183


>AT1G58250.1 | Symbols: SAB | Golgi-body localisation protein domain
            ;RNA pol II promoter Fmp27 protein domain |
            chr1:21587317-21601373 REVERSE LENGTH=2607
          Length = 2607

 Score =  228 bits (580), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 125/187 (66%), Positives = 133/187 (71%), Gaps = 1/187 (0%)

Query: 1    MTSRQFQVMLDVLTNLLFARLPKPRKSSLSFPAXXXXXXXXXXXXXXXXXXXXXXLAKIN 60
            MTSRQFQVMLDVLTNLLFARLPKPRKSSL  P                       LAKIN
Sbjct: 1950 MTSRQFQVMLDVLTNLLFARLPKPRKSSLQCPTEDEDVEEEADEVVPYGVEEVE-LAKIN 2008

Query: 61   XXXXXXXXXXXXDDIRELSLWCDPSTDLHPEKESDLWMINGGRSMLIQGLKRELLSAQKS 120
                        DDIR+LS   D   D H E+E +LWMI+  RS+L+QGLK+EL  AQKS
Sbjct: 2009 LEEKERERKLLLDDIRKLSPCSDNMDDTHIEREGELWMISTRRSILVQGLKKELTYAQKS 2068

Query: 121  RKAASVSLRTALQKAAQLRLTEKEKNKSPSYAMRISLQINKVVWSMLVDGKSFAEAEIND 180
            RKAAS SLR ALQKAAQLR+ EKEKNKSPSYAM ISLQINKVVWSMLVDGKSFAEAEIND
Sbjct: 2069 RKAASASLRMALQKAAQLRIMEKEKNKSPSYAMCISLQINKVVWSMLVDGKSFAEAEIND 2128

Query: 181  MIYDFDR 187
            MIYDFDR
Sbjct: 2129 MIYDFDR 2135


>AT5G49680.2 | Symbols:  | Golgi-body localisation protein domain ;RNA
            pol II promoter Fmp27 protein domain |
            chr5:20176385-20188307 FORWARD LENGTH=2587
          Length = 2587

 Score =  181 bits (460), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 96/187 (51%), Positives = 122/187 (65%)

Query: 1    MTSRQFQVMLDVLTNLLFARLPKPRKSSLSFPAXXXXXXXXXXXXXXXXXXXXXXLAKIN 60
            MTSRQFQVM DVL+NLLFARLPK    SL                          LAKI 
Sbjct: 1956 MTSRQFQVMTDVLSNLLFARLPKAHNDSLKLSGEEDDEVEEEIDEVVPDGIEEVELAKIE 2015

Query: 61   XXXXXXXXXXXXDDIRELSLWCDPSTDLHPEKESDLWMINGGRSMLIQGLKRELLSAQKS 120
                        DDIR+L+     S +++ EKESD WMI+GGR +L++ L++  LS Q+S
Sbjct: 2016 LEAKERDRMMLLDDIRKLTQNESNSGNINLEKESDFWMISGGRPVLVERLRKAYLSVQQS 2075

Query: 121  RKAASVSLRTALQKAAQLRLTEKEKNKSPSYAMRISLQINKVVWSMLVDGKSFAEAEIND 180
            RK A  +LRT+++ AA+LRL EK+KNK PS AMRISLQINKV+WSM++DGK+FAE EI++
Sbjct: 2076 RKTAYTALRTSVKNAAELRLLEKDKNKRPSSAMRISLQINKVIWSMVLDGKTFAEVEIDN 2135

Query: 181  MIYDFDR 187
            MIYDF+R
Sbjct: 2136 MIYDFNR 2142