Miyakogusa Predicted Gene

Lj3g3v0564930.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0564930.1 tr|C1MYQ9|C1MYQ9_MICPC Predicted protein
OS=Micromonas pusilla (strain CCMP1545)
GN=MICPUCDRAFT_2787,36.59,1e-16,AA_TRNA_LIGASE_II_GLYAB,Glycine-tRNA
synthetase, heterodimeric; DALR_1,DALR anticodon binding;
SUBFA,CUFF.40972.1
         (122 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G48110.1 | Symbols: EDD1, EDD | glycine-tRNA ligases | chr3:1...   173   3e-44

>AT3G48110.1 | Symbols: EDD1, EDD | glycine-tRNA ligases |
            chr3:17763111-17770964 FORWARD LENGTH=1067
          Length = 1067

 Score =  173 bits (438), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 79/121 (65%), Positives = 104/121 (85%)

Query: 2    EELSKGKLFPKVVEAYSRPTRIVRGKEIELHMEVDVAAFETNEERVLWSTFLSVKKSINP 61
            E+LSKG++FPK+VEAYSRPTRIVRGK++ + +EVD  AFET +ER LWST+ S+K  I+ 
Sbjct: 947  EKLSKGEMFPKIVEAYSRPTRIVRGKDVGVGVEVDENAFETPQERTLWSTYTSIKDRIHT 1006

Query: 62   GIDIDDFVDISSQLVQPLEDFFNNVFVMVDDDKIRENRLALLKGIAELPKGIADLTVIPG 121
            GI+I+DF +IS QLV+PLEDFFNNVFVMV+++++R+NRLALL  IA LPKG+ DL+ +PG
Sbjct: 1007 GIEIEDFTEISMQLVEPLEDFFNNVFVMVEEERVRKNRLALLNNIANLPKGVIDLSFLPG 1066

Query: 122  F 122
            F
Sbjct: 1067 F 1067