Miyakogusa Predicted Gene

Lj3g3v0563900.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0563900.1 tr|H2KW91|H2KW91_ORYSJ RWD domain containing
protein, expressed OS=Oryza sativa subsp. japonica
GN=L,62.5,1e-16,Ring finger,Zinc finger, RING-type; zf-RING_2,Zinc
finger, RING-type; ZF_RING_2,Zinc finger, RING-ty,CUFF.40965.1
         (312 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G60300.1 | Symbols:  | RWD domain-containing protein | chr3:2...   195   3e-50
AT3G60300.2 | Symbols:  | RWD domain-containing protein | chr3:2...   195   3e-50

>AT3G60300.1 | Symbols:  | RWD domain-containing protein |
           chr3:22285371-22287382 FORWARD LENGTH=366
          Length = 366

 Score =  195 bits (496), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 91/176 (51%), Positives = 118/176 (67%), Gaps = 5/176 (2%)

Query: 1   MNHPDGDCPLCLFPLVPDDRQSETLPFMKLMSCFHCFHSECIGRWWNWLQISKQTGSSSS 60
           MNHP+GDCPLCL+PL P+D  S+ +PFMKLMSCFHCFH ECI RWWNWL   ++  S S 
Sbjct: 114 MNHPEGDCPLCLYPLFPEDGGSKQMPFMKLMSCFHCFHCECIIRWWNWLHAQEEADSKSG 173

Query: 61  DTATARPNKDSYK----KLDDGVGNCPVCRKPFHAKDLDHVLDLVGSHPSQSXXXXXXXX 116
           DT   R    + +      D  +GNCPVCRK FH+ D++HVLDLVG+  S          
Sbjct: 174 DTLHMRRGSTAREGNSGSADKSLGNCPVCRKIFHSSDIEHVLDLVGAQ-SSLQDSSLIPG 232

Query: 117 XXEEKLLQSEYEIIRRQKFEAILNIQKEKSGLIEPKIDLVITPGMYLPQPVAAPSS 172
             ++ LLQS+ E IRR++FE+IL  Q+EK GL++PK ++ + PGMYLP P  A +S
Sbjct: 233 KDQDPLLQSDSENIRRERFESILKTQEEKGGLVQPKKNISVVPGMYLPPPAHASTS 288


>AT3G60300.2 | Symbols:  | RWD domain-containing protein |
           chr3:22285371-22287382 FORWARD LENGTH=383
          Length = 383

 Score =  195 bits (496), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 91/176 (51%), Positives = 118/176 (67%), Gaps = 5/176 (2%)

Query: 1   MNHPDGDCPLCLFPLVPDDRQSETLPFMKLMSCFHCFHSECIGRWWNWLQISKQTGSSSS 60
           MNHP+GDCPLCL+PL P+D  S+ +PFMKLMSCFHCFH ECI RWWNWL   ++  S S 
Sbjct: 131 MNHPEGDCPLCLYPLFPEDGGSKQMPFMKLMSCFHCFHCECIIRWWNWLHAQEEADSKSG 190

Query: 61  DTATARPNKDSYK----KLDDGVGNCPVCRKPFHAKDLDHVLDLVGSHPSQSXXXXXXXX 116
           DT   R    + +      D  +GNCPVCRK FH+ D++HVLDLVG+  S          
Sbjct: 191 DTLHMRRGSTAREGNSGSADKSLGNCPVCRKIFHSSDIEHVLDLVGAQ-SSLQDSSLIPG 249

Query: 117 XXEEKLLQSEYEIIRRQKFEAILNIQKEKSGLIEPKIDLVITPGMYLPQPVAAPSS 172
             ++ LLQS+ E IRR++FE+IL  Q+EK GL++PK ++ + PGMYLP P  A +S
Sbjct: 250 KDQDPLLQSDSENIRRERFESILKTQEEKGGLVQPKKNISVVPGMYLPPPAHASTS 305