Miyakogusa Predicted Gene

Lj3g3v0537460.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0537460.1 Non Chatacterized Hit- tr|A5BAD7|A5BAD7_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,48.25,2e-18,
,CUFF.40940.1
         (158 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G34419.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    87   4e-18
AT3G19200.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    62   1e-10
AT5G66800.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    56   1e-08
AT3G50640.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    54   4e-08

>AT4G34419.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT3G19200.1). | chr4:16456597-16456986 FORWARD
           LENGTH=129
          Length = 129

 Score = 87.4 bits (215), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/118 (50%), Positives = 71/118 (60%), Gaps = 17/118 (14%)

Query: 37  STMDPRISFSHDFVVGQQPMKHENI-YREAPVSSD-FEFSVKNYSMIPADEVFSQGMLLP 94
           S  +PRISFS  F       KHE I Y+EAPVSSD FEF V+N+SM  ADE+F  GM+LP
Sbjct: 14  SYAEPRISFSSGFAA----TKHEMIKYKEAPVSSDDFEFGVENFSMTTADEIFFDGMILP 69

Query: 95  LNKKV-------TLRDELLVNDDYGKDLPR-LSKSYSSRWKERFGLKRIGSKKEKHKS 144
           L ++V       TLR+EL   D    D PR  SK  S  W+ER GL  + SKK+  KS
Sbjct: 70  LKEEVNTTKRMSTLREELSEEDG---DSPRSKSKGSSGWWRERLGLAFVRSKKDHKKS 124


>AT3G19200.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT4G34419.1); Has 51 Blast hits to 51 proteins in
           10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr3:6649478-6650006 REVERSE
           LENGTH=143
          Length = 143

 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/111 (42%), Positives = 59/111 (53%), Gaps = 20/111 (18%)

Query: 37  STMDPRISFSHDFVVGQQPMKH-------ENIYREAPVSSDFEFSVKNYSMI-PADEVFS 88
           S +D RISFS+DF       KH       +  Y+EAPVSSDF+F+V+N+     ADE+F 
Sbjct: 13  SFVDARISFSNDF--ADSDSKHTASRADGQMKYKEAPVSSDFKFNVENFGFTSAADEIFF 70

Query: 89  QGMLLPLNKK-----VTLRDELLVNDDYGKDLPRLSKSYSSRWKERFGLKR 134
            G+LLPL K       TLRDEL   D    D    SK   + WK   GL +
Sbjct: 71  GGVLLPLEKTTQRKVTTLRDELSAQD---SDRTISSKGSRNWWK--LGLNK 116


>AT5G66800.1 | Symbols:  | unknown protein; BEST Arabidopsis
          thaliana protein match is: unknown protein
          (TAIR:AT3G50640.1); Has 1807 Blast hits to 1807
          proteins in 277 species: Archae - 0; Bacteria - 0;
          Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
          Other Eukaryotes - 339 (source: NCBI BLink). |
          chr5:26671433-26672116 FORWARD LENGTH=183
          Length = 183

 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 41/67 (61%), Gaps = 12/67 (17%)

Query: 39 MDPRISFSHDFVVGQQPMKHENIYREAPVS----------SDFEFSVKNYSMIPADEVFS 88
          M PRISFS+DFV  +   +     R +P+S           +FEFSV NY+M+PADE+FS
Sbjct: 17 MSPRISFSNDFV--EIRPETTKTTRSSPLSKQEGSSSSFSDNFEFSVSNYTMMPADELFS 74

Query: 89 QGMLLPL 95
          +G LLP 
Sbjct: 75 KGKLLPF 81


>AT3G50640.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT5G66800.1); Has 67 Blast hits to 67 proteins in
           10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr3:18804027-18804639 REVERSE
           LENGTH=166
          Length = 166

 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 73/141 (51%), Gaps = 25/141 (17%)

Query: 36  HSTMD--PRISFSHDFV---VGQQPMKHENIYREAPVS---SDFEFSVKNYSMIPADEVF 87
           H++M+   RISFS++FV     +   K  NI   +  S   +DF FSV +YSMIPADE+F
Sbjct: 7   HNSMNGAARISFSNEFVEIRSEKSNAKSNNINSRSSFSMPSADFAFSVTDYSMIPADEIF 66

Query: 88  SQGMLLPLNKKVTLRDEL-----------LVNDDYGKDLPRL--SKSYSSR--WKERFGL 132
            +G +LP  +   +   L           +V+ +     P L  S S+S++  W+E  GL
Sbjct: 67  LKGKILPFKETSHVHRTLGEELLTEEEGSMVDGNTFSLRPILLSSSSFSTKGTWRELLGL 126

Query: 133 KR--IGSKKEKHKSDGFLQRD 151
           KR  + SKK    ++  L +D
Sbjct: 127 KRTHVRSKKTDKVNEEVLSQD 147