Miyakogusa Predicted Gene

Lj3g3v0527350.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0527350.1 tr|D7KV18|D7KV18_ARALL F1N21.14 OS=Arabidopsis
lyrata subsp. lyrata GN=ARALYDRAFT_315746 PE=4
SV=1,49.45,1e-17,zf-RanBP,Zinc finger, RanBP2-type; Ran BP2/NZF zinc
finger-like,NULL; Zinc finger domain,Zinc finger,CUFF.40935.1
         (244 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G67325.2 | Symbols:  | Ran BP2/NZF zinc finger-like superfami...   143   1e-34
AT1G67325.1 | Symbols:  | Ran BP2/NZF zinc finger-like superfami...   139   1e-33
AT1G55040.1 | Symbols:  | zinc finger (Ran-binding) family prote...    50   1e-06

>AT1G67325.2 | Symbols:  | Ran BP2/NZF zinc finger-like superfamily
           protein | chr1:25209825-25212412 REVERSE LENGTH=288
          Length = 288

 Score =  143 bits (360), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 104/271 (38%), Positives = 132/271 (48%), Gaps = 45/271 (16%)

Query: 8   NRGSFGSKRSRNDVSRKDGDWSCPNCGNLNFSFRTVCNRGHCGAPRPPITPPAQVMSPYN 67
           NR S  +KR+R D  R++ DW CP+CGN+NFSFRT CN  +C  PRP          P  
Sbjct: 6   NRNSSAAKRARTDGGRREDDWICPSCGNVNFSFRTTCNMRNCTQPRPADHNGKSAPKPMQ 65

Query: 68  NGHPQFY-----YGGVVAPPPLYGVSSRFGSPL-----------PHSG---VQYDYGLYP 108
             H Q +     Y G   PPP+Y   S +GSPL           P SG     ++Y    
Sbjct: 66  --HQQGFSSPGAYLGSGGPPPVYMGGSPYGSPLFNGSSMPPYDVPFSGGSPYHFNYNSRM 123

Query: 109 RPRVSYSPI-----PPFLPGSFGGIAYSPR--PKINPYGYGF-QSPTWDMGLVTD----- 155
                Y P+     PP+  GS  G        P I+ YG G    P     ++       
Sbjct: 124 PAGAHYRPLHMSGPPPYHGGSMMGSGGMYGMPPPIDRYGLGMAMGPGSAAAMMPRPRFYP 183

Query: 156 NSASRKRRGGPDGLSEGDWICPKCDNVNFAFRTNCNMKHCGAPKSGKSQANTS------- 208
           +  S+KR    D   + DW CP C NVNF+FRT CNM+ C  PK G  Q  +S       
Sbjct: 184 DEKSQKR----DSTRDNDWTCPNCGNVNFSFRTVCNMRKCNTPKPGSQQGGSSDKISKQN 239

Query: 209 IPEGSWTCKKCGNLNYPFRSVCNRKDCGSEK 239
            PEGSW C  CGN+NYPFRS CNR++CG++K
Sbjct: 240 APEGSWKCDNCGNINYPFRSKCNRQNCGADK 270


>AT1G67325.1 | Symbols:  | Ran BP2/NZF zinc finger-like superfamily
           protein | chr1:25209825-25212412 REVERSE LENGTH=287
          Length = 287

 Score =  139 bits (351), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 105/271 (38%), Positives = 133/271 (49%), Gaps = 46/271 (16%)

Query: 8   NRGSFGSKRSRNDVSRKDGDWSCPNCGNLNFSFRTVCNRGHCGAPRPPITPPAQVMSPYN 67
           NR S  +KR+R D  R++ DW CP+CGN+NFSFRT CN  +C  PRP          P  
Sbjct: 6   NRNSSAAKRARTDGGRREDDWICPSCGNVNFSFRTTCNMRNCTQPRPADHNGKSAPKPMQ 65

Query: 68  NGHPQFY-----YGGVVAPPPLYGVSSRFGSPL-----------PHSG---VQYDYGLYP 108
             H Q +     Y G   PPP+Y   S +GSPL           P SG     ++Y    
Sbjct: 66  --HQQGFSSPGAYLGSGGPPPVYMGGSPYGSPLFNGSSMPPYDVPFSGGSPYHFNYNSRM 123

Query: 109 RPRVSYSPI-----PPFLPGSFGGIAYSPR--PKINPYGYGF-QSPTWDMGLVTD----- 155
                Y P+     PP+  GS  G        P I+ YG G    P     ++       
Sbjct: 124 PAGAHYRPLHMSGPPPYHGGSMMGSGGMYGMPPPIDRYGLGMAMGPGSAAAMMPRPRFYP 183

Query: 156 NSASRKRRGGPDGLSEGDWICPKCDNVNFAFRTNCNMKHCGAPKSGKSQANTS------- 208
           +  S+KR    D   + DW CP C NVNF+FRT CNM+ C  PK G SQ  +S       
Sbjct: 184 DEKSQKR----DSTRDNDWTCPNCGNVNFSFRTVCNMRKCNTPKPG-SQGGSSDKISKQN 238

Query: 209 IPEGSWTCKKCGNLNYPFRSVCNRKDCGSEK 239
            PEGSW C  CGN+NYPFRS CNR++CG++K
Sbjct: 239 APEGSWKCDNCGNINYPFRSKCNRQNCGADK 269


>AT1G55040.1 | Symbols:  | zinc finger (Ran-binding) family protein
           | chr1:20534895-20538901 FORWARD LENGTH=849
          Length = 849

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 36/77 (46%), Gaps = 9/77 (11%)

Query: 161 KRRGGPDG--LSEGDWICPKCDNVNFAFRTNCNMKHCGAPKSGKSQANTSIPEGSWTCKK 218
           KRR G D   + +GDW+CPKCD +NFA  T C       PK         +  G W C +
Sbjct: 360 KRRVGRDDVEMKKGDWLCPKCDFMNFAKNTICLQCDAKRPK-------RQLLPGEWECPE 412

Query: 219 CGNLNYPFRSVCNRKDC 235
           C  LNY     C   DC
Sbjct: 413 CNFLNYRRNMACFHCDC 429