Miyakogusa Predicted Gene

Lj3g3v0515090.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0515090.1 Non Chatacterized Hit- tr|B9RD22|B9RD22_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,53.62,0.0000000000005, ,CUFF.40921.1
         (76 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G60400.1 | Symbols:  | Mitochondrial transcription terminatio...    70   3e-13

>AT3G60400.1 | Symbols:  | Mitochondrial transcription termination
          factor family protein | chr3:22329093-22330769 FORWARD
          LENGTH=558
          Length = 558

 Score = 70.1 bits (170), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/70 (47%), Positives = 48/70 (68%)

Query: 7  IRHFCSSTTSNLSKKPSRYKKVVLVQAQQAITDYLHSTRSIPYAHADQIAKNSLLTLTNL 66
          I H  S+  +   + PS+YK + + +AQQAITDYLH+TRS+ Y HA+QIA N+ +++ NL
Sbjct: 11 ISHNFSTVAAKHRRVPSKYKSLAIGKAQQAITDYLHTTRSLSYTHAEQIASNASVSIRNL 70

Query: 67 ISKLGSFTPS 76
          I KL    P+
Sbjct: 71 ILKLDFSVPT 80