Miyakogusa Predicted Gene

Lj3g3v0514080.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0514080.1 Non Chatacterized Hit- tr|B9S3H7|B9S3H7_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,25.56,1e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
mTERF,Mitochodrial transcription termination factor,CUFF.40970.1
         (409 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G60400.1 | Symbols:  | Mitochondrial transcription terminatio...   406   e-113
AT4G19650.1 | Symbols:  | Mitochondrial transcription terminatio...   110   2e-24
AT5G45113.1 | Symbols:  | mitochondrial transcription terminatio...    99   6e-21
AT5G06810.1 | Symbols:  | Mitochondrial transcription terminatio...    91   2e-18
AT1G74120.1 | Symbols:  | Mitochondrial transcription terminatio...    55   6e-08
AT5G54180.1 | Symbols: PTAC15 | plastid transcriptionally active...    55   1e-07

>AT3G60400.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr3:22329093-22330769 FORWARD
           LENGTH=558
          Length = 558

 Score =  406 bits (1044), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 196/405 (48%), Positives = 271/405 (66%), Gaps = 3/405 (0%)

Query: 2   ESSSVFKRSGSELKGRLCGLKMQGFTNVQVVGICLAFPFVFCEQEGGEFGGRIDGLLNDL 61
           E   VF +   E++ RL   K  GF+ V V+G CLA P   C   GGE G  I  L   L
Sbjct: 151 EERLVFVQRPGEIESRLLKFKDIGFSTVAVIGTCLAIPRTLCG--GGELGSEIRCLFVKL 208

Query: 62  KLVFLDFDLAGSVEGNAGTWYEVCRKIKMFYDLSKGNEGEIGELIGRNKGVIVEHGEEVL 121
           K +F +FD     E N  +W  V RKI++FYDL   NE E+ EL+ RNK + +E+ EE L
Sbjct: 209 KRLFDEFDSHHLFEENVDSWLAVSRKIRIFYDLGCENE-EMWELMCRNKSLFLEYSEEAL 267

Query: 122 LQKAEYFCRFGIKKEEVARLILQGSELLKLDLETPVINVLKLLKHFGMSSKDIEDVKGNY 181
           + KA YFCRFG+ KE+ A LIL+   ++  DLE PVI+V  +LKHFG+   +++ V   Y
Sbjct: 268 MNKAGYFCRFGVSKEDAALLILRNPAIMNFDLEKPVISVTGMLKHFGLRQDEVDAVAQKY 327

Query: 182 AHVLGTSKMAYLPNVMRALGLHEWFFNKIKDGNHHLLVSYVTSYPNESHDKAYQSGLKTI 241
            +V G +++  LP V+RA+ LHE  F+ +K+GNHHLL SY    P+E  ++ YQ GL+ +
Sbjct: 328 PYVFGRNQLKNLPYVLRAIDLHERIFDILKNGNHHLLASYTLMDPDEDLEREYQEGLEEL 387

Query: 242 KVSRTPTHNMSKLNFLHAMGFGENALTLKIFTNLHGPSCELQKRFDCYLRSGVEFSKLCK 301
           + SRT  HN+ KL+FLH +GFGEN +T+K+  ++HG + EL  RF   L SG+ FSK+C 
Sbjct: 388 QNSRTKRHNIQKLDFLHEIGFGENGITMKVLQHVHGTAVELHDRFQILLNSGIIFSKICM 447

Query: 302 QIRIQPKILSQNPENIENKINFLCQEMGYSVELLDSFPAFLCFNLENRIKPRYRFYMWVM 361
            IR  PKIL+Q P +I++K+ FLC EMG S++ L+ FPA+LCF+LENRI PR+RF+ W++
Sbjct: 448 LIRSAPKILNQKPHSIQDKLRFLCGEMGDSLDYLEVFPAYLCFDLENRISPRFRFHKWLV 507

Query: 362 EKGLLTKNYSIATMIATSNKDFVGRIFKIHPAAPKHWFEQFYPRK 406
           EKG   K+YSIA+++ATS K F+ R++ IHPA PKHWFE+F  RK
Sbjct: 508 EKGFSEKSYSIASIVATSEKAFIARLYGIHPAIPKHWFERFSSRK 552


>AT4G19650.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr4:10691674-10695166 FORWARD
           LENGTH=575
          Length = 575

 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/401 (22%), Positives = 176/401 (43%), Gaps = 21/401 (5%)

Query: 2   ESSSVFKRSGSELKGRLCGLKMQGFTNVQVVGICLAFPFVFCEQEGGEFGGRIDGLLNDL 61
           E+  +F+     L  +L G +  G +   V+ +  + P +       EF   +D     L
Sbjct: 184 EAREIFRYESGMLAMKLRGYENLGLSKATVIKLVTSCPLLLVGGIDAEFSSVVD----KL 239

Query: 62  KLVFLDFDLAGSVEGNAGT--WYEVCRKIKMFYDLSKGNEGEIGELIGRNKGVIVE-HGE 118
           K + +  D  G    +  T  W  +   I+ F D     E ++  L+     +++E  G+
Sbjct: 240 KGLQVGCDWLGRYLSDRKTYSWRRILETIE-FLDKVGCKEEKLSSLLKTYPALVIEGSGK 298

Query: 119 EVLLQKAEYFCRFGIKKEEVARLILQGSELLKLDLETPVINVLKLLKHFGMSSKDIEDVK 178
           +  +     F + G++  E+ RL +   E+L       +   L  L    M ++ I  + 
Sbjct: 299 KFYVLFGRLF-KAGLQVNEIYRLFIDNPEMLSDKCVKNIQKTLDFLIAIRMETQFITKIL 357

Query: 179 GNYAHVLGTSKMAYLPNVMRALGLHEWFFNKIKDGNHHLLVSYVTSYPNESHDKAYQSGL 238
            ++  ++G+  +        +L + +    KI       L  +V++              
Sbjct: 358 LSHMELIGSCSLPAPRTACLSLNVKQDELCKILKKEPLRLFCFVSTTKKR---------- 407

Query: 239 KTIKVSRTPTHNMSKLNFLHAMGFGENALTL-KIFTNLHGPSCELQKRFDCYLRSGVEFS 297
           K+  +S      + K  FL  +G+ EN+  + K      G   +LQ+RFDC +++G+ ++
Sbjct: 408 KSKPLSEDSRKYLEKTEFLLRLGYVENSDEMVKALKQFRGRGDQLQERFDCLVKAGLNYN 467

Query: 298 KLCKQIRIQPKILSQNPENIENKINFLCQEMGYSVELLDSFPAFLCFNLENRIKPRYRFY 357
            + + IR  P IL+ + + IE KI+ L + +GY +E L  FPA+LC++++ RI  R+  Y
Sbjct: 468 VVTEIIRHAPMILNLSKDVIEKKIHSLTELLGYPIESLVRFPAYLCYDMQ-RIHHRFSMY 526

Query: 358 MWVMEKGLLTKNYSIATMIATSNKDFVGRIFKIHPAAPKHW 398
           +W+ E+       S +T++   +  FV     +HP  P  W
Sbjct: 527 LWLRERDAAKPMLSPSTILTCGDARFVKYFVNVHPEGPAIW 567


>AT5G45113.1 | Symbols:  | mitochondrial transcription termination
           factor-related / mTERF-related | chr5:18232277-18233521
           REVERSE LENGTH=414
          Length = 414

 Score = 98.6 bits (244), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 132/275 (48%), Gaps = 15/275 (5%)

Query: 126 EYFCRFGIKKEEVARLILQGSELLKLDLETPVINVLKLLKHFGMSSK-DIEDVKGNYAHV 184
           E F + G++  E+ +L++  SE+L       ++  LK LK   +  +  +  ++ +  H+
Sbjct: 145 EKFHKVGLQMNEIDKLLIDNSEMLLEKSVKRILEALKFLKCIRIEKQFVVRFLQCHMKHI 204

Query: 185 LGTSKMAYLPNVMRALGLHEWFFNKIKDGNHHLLVSYVTSYPNESHDKAYQSGLKTIKVS 244
             +S +     V RA+    W   KI+      L   +   P      A ++    I++ 
Sbjct: 205 CSSSLL-----VPRAV----WNRLKIRRDE---LCQIIKEEPLRLFSIASKTNKGRIELD 252

Query: 245 RTPTHNMSKLNFLHAMGFGENALTL-KIFTNLHGPSCELQKRFDCYLRSGVEFSKLCKQI 303
              + N  K  FL  +G+ EN+  + +      G   ELQ+RFDC++++G++++ + + +
Sbjct: 253 SLDSRNAEKTTFLLKLGYVENSDEMVRALKKFQGRGDELQERFDCFVKAGLDYNVVSQLV 312

Query: 304 RIQPKILSQNPENIENKINFLCQEMGYSVELLDSFPAFLCFNLENRIKPRYRFYMWVMEK 363
           +  P IL++  + IE KI  L   + Y +E +   P +LC++++ RI  R+  Y+W+ E+
Sbjct: 313 KRAPHILNRPKDIIEKKIIMLIDYLVYPIESVIESPTYLCYSMK-RIHQRFTMYIWLRER 371

Query: 364 GLLTKNYSIATMIATSNKDFVGRIFKIHPAAPKHW 398
             +    ++ T++  SN   V      HP  P  W
Sbjct: 372 DAVIPRLTLGTVVGISNTLIVPYFVNTHPEGPATW 406


>AT5G06810.1 | Symbols:  | Mitochondrial transcription termination
            factor family protein | chr5:2108493-2112256 FORWARD
            LENGTH=1141
          Length = 1141

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 143/326 (43%), Gaps = 26/326 (7%)

Query: 81   WYEVCRKIKMFYDLSKGNEGEIGELIGRNKGVIVEHGEEVLLQKAEYFCRFGIKKEEVAR 140
            W  + R +    DL   +E E+ ELI +   +I E   E  L  A +  + G  + E++ 
Sbjct: 823  WSSMHRCLSFLRDLY-VDENELCELIRKMPRLIFEDSGEWTLILAGFEAKLGSSRSELSS 881

Query: 141  LILQGSELLKLDLETPVINV---LKLLKHFGMSSKDIEDVKGNYAHVLGTSKMAYLPNVM 197
            L  +  +   L     V+N+      LK   M   +I  +   ++  +G S++     ++
Sbjct: 882  LFQKFPQCQSLG--KFVLNLRHCFLFLKDIEMDDDEIGKIFRLHSLWIGVSRLKQTSTLL 939

Query: 198  RALGLHEWFFNKIKDGNHHLLVSYVTSYPNESHDKAYQSGLKTIKVSRT-----PTHNMS 252
              L            G    L   +   P E   K +  GL+   +  T           
Sbjct: 940  INL-----------KGGKGRLCQVIQENPEEM--KKWIMGLRVQPLPATGYKVNTKSKTM 986

Query: 253  KLNFLHAMGFGENALTL-KIFTNLHGPSCELQKRFDCYLRSGVEFSKLCKQIRIQPKILS 311
            K  FL  +G+ EN+  + +   N  G   EL++RF+  +  G+    +   ++  P IL+
Sbjct: 987  KTQFLLDLGYKENSEEMERALKNFRGKGSELRERFNVLVSFGLTEKDVKDMVKACPSILT 1046

Query: 312  QNPENIENKINFLCQEMGYSVELLDSFPAFLCFNLENRIKPRYRFYMWVMEKGLLTKNYS 371
            Q  + +E+K+N+L +E+GY +  L +FP  L + L+ R+K R+  + W+ ++G       
Sbjct: 1047 QACDILESKVNYLVKELGYPLSTLVTFPTCLKYTLQ-RMKLRFSMFSWLQDRGKADPKLQ 1105

Query: 372  IATMIATSNKDFVGRIFKIHPAAPKH 397
            ++T++  S+K F  R    HP  PKH
Sbjct: 1106 VSTILVCSDKFFATRFVNRHPDGPKH 1131



 Score = 81.6 bits (200), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 117/251 (46%), Gaps = 24/251 (9%)

Query: 146 SELLKLDLETPVINVLK----------LLKHFGMSSKDIEDVKGNYAHVLGTSKMAYLPN 195
           SEL  L  + P+I V K           LK   M   +I  V  +++  LG+ K+    +
Sbjct: 323 SELCSLFQKFPLIQVEKCVSNLRQCFLFLKEIEMEDDEIHKVFRSHSWWLGSCKLKKTSS 382

Query: 196 VMRALGLHEWFFNKIKDGNHHLLVSYVTSYPNESHDKAYQSGLKTIKVSRTPTHNMS-KL 254
           ++  L          K G   +    +   P E       S ++ +  +     + S K 
Sbjct: 383 LLVFL----------KAGKTRV-CQVIQENPEEMKKWTMGSKIQPLPATNVDIESKSMKT 431

Query: 255 NFLHAMGFGENALTLKI-FTNLHGPSCELQKRFDCYLRSGVEFSKLCKQIRIQPKILSQN 313
            FL  +G+ EN+  ++    N  G   EL++RF+  +  G     +   ++  P +LSQ 
Sbjct: 432 QFLLDLGYKENSEEMETAMKNFRGKGSELRERFNVLVSLGFTKKDVKDMVKACPTMLSQT 491

Query: 314 PENIENKINFLCQEMGYSVELLDSFPAFLCFNLENRIKPRYRFYMWVMEKGLLTKNYSIA 373
            + +E+K+N+L +E+GY +  L  FP+ L F L+ R+K R+  + W+  +G + +   ++
Sbjct: 492 CDILESKVNYLIKELGYPLSTLVDFPSCLKFTLQ-RMKLRFAMFSWLQARGKVDRKIKVS 550

Query: 374 TMIATSNKDFV 384
           TM+A S+K FV
Sbjct: 551 TMLACSDKIFV 561


>AT1G74120.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr1:27871923-27873260 REVERSE
           LENGTH=445
          Length = 445

 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 52/103 (50%)

Query: 281 ELQKRFDCYLRSGVEFSKLCKQIRIQPKILSQNPENIENKINFLCQEMGYSVELLDSFPA 340
           E++ R DC  + G+      K +  +P+++    E+IE KI FL   MG+ +  L   P 
Sbjct: 284 EVKLRVDCLCKYGLIRRDAFKVVWKEPRVILYEIEDIEKKIEFLTNRMGFHINCLADVPE 343

Query: 341 FLCFNLENRIKPRYRFYMWVMEKGLLTKNYSIATMIATSNKDF 383
           +L  NL+ +I PRY    ++  KG L  +  +  +I  S K F
Sbjct: 344 YLGVNLQKQIVPRYNVIDYLKLKGGLGCDIGLKGLIKPSMKRF 386


>AT5G54180.1 | Symbols: PTAC15 | plastid transcriptionally active 15
           | chr5:21988544-21990183 FORWARD LENGTH=500
          Length = 500

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 3/109 (2%)

Query: 249 HNMS-KLNFLHAMGFGENA--LTLKIFTNLHGPSCELQKRFDCYLRSGVEFSKLCKQIRI 305
           +N+S KL FL  +G+      L   +       S  +Q+    YL  G+ F  +      
Sbjct: 356 NNLSHKLGFLVKIGYKHRTKELAFAMGAVTRTSSDNMQRVIGLYLSYGLSFEDILAMSTK 415

Query: 306 QPKILSQNPENIENKINFLCQEMGYSVELLDSFPAFLCFNLENRIKPRY 354
            P++L  N  ++E K+ +L + MG  VE L +FPAFL + L++RIK RY
Sbjct: 416 HPQVLQYNYTSLEEKLEYLIEYMGREVEELLAFPAFLGYKLDSRIKHRY 464