Miyakogusa Predicted Gene

Lj3g3v0514040.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0514040.1 Non Chatacterized Hit- tr|A5AP35|A5AP35_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,25.86,0.000000000000007,PsbQ,Photosystem II PsbQ, oxygen evolving
complex; seg,NULL; no description,NULL; Oxygen-evolving
en,CUFF.40966.1
         (234 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G05180.1 | Symbols: PSBQ, PSBQ-2, PSII-Q | photosystem II sub...   288   2e-78
AT4G21280.1 | Symbols: PSBQ, PSBQA, PSBQ-1 | photosystem II subu...   261   3e-70
AT4G21280.2 | Symbols: PSBQ, PSBQA, PSBQ-1 | photosystem II subu...   257   5e-69
AT1G14150.1 | Symbols: PQL1, PQL2 | PsbQ-like 2 | chr1:4839885-4...    64   1e-10
AT3G01440.1 | Symbols: PQL1, PQL2 | PsbQ-like 1 | chr3:168478-16...    60   1e-09
AT1G14150.2 | Symbols: PQL1, PQL2 | PsbQ-like 2 | chr1:4839885-4...    53   2e-07
AT2G01918.1 | Symbols: PQL3 | PsbQ-like 3 | chr2:424254-425678 R...    52   3e-07

>AT4G05180.1 | Symbols: PSBQ, PSBQ-2, PSII-Q | photosystem II
           subunit Q-2 | chr4:2672093-2673170 REVERSE LENGTH=230
          Length = 230

 Score =  288 bits (737), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 151/234 (64%), Positives = 176/234 (75%), Gaps = 4/234 (1%)

Query: 1   MAQAMASMAGLRGSSQAVLEGSLQLSGXXXXXXXXXXXXXXXXXXXXXXXVRANQVPSEP 60
           MAQA+ SMAGLRG+SQAVLEGSLQ++G                       +RA Q  S P
Sbjct: 1   MAQAVTSMAGLRGASQAVLEGSLQINGSNRLNISRVSVGSQRTGLV----IRAQQNVSVP 56

Query: 61  QISRRAVMGLVAAGLATGSFVQAVLAEAKSIKVXXXXXXXXXXXXTLNSDEARDLELPLK 120
           + SRR+V+GLVAAGLA GSFV+AV AEA  IKV            T NSD+ARD  L LK
Sbjct: 57  ESSRRSVIGLVAAGLAGGSFVKAVFAEAIPIKVGGPPLPSGGLPGTDNSDQARDFSLALK 116

Query: 121 ERFFLQPLSPTEAAQRAKESAKEIVAVKKFIDQKAWPYVQNDLRLRASYLRYDLNTVISS 180
           +RF++QPLSPTEAA RAK+SAKEI+ VK FID+KAWPYVQNDLRLRASYLRYDLNTVIS+
Sbjct: 117 DRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVISA 176

Query: 181 KPKDQKQSLKELSAKLFQDISNLDYAAKVKSSPQAEKYYAEAVSTLNDVLGKLG 234
           KPK++KQSLK+L+AKLFQ I NLDYAA+ KSSP AEKYY+E VS+LN+VL KLG
Sbjct: 177 KPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNVLAKLG 230


>AT4G21280.1 | Symbols: PSBQ, PSBQA, PSBQ-1 | photosystem II subunit
           QA | chr4:11334446-11335587 FORWARD LENGTH=223
          Length = 223

 Score =  261 bits (667), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 144/230 (62%), Positives = 165/230 (71%), Gaps = 7/230 (3%)

Query: 5   MASMAGLRGSSQAVLEGSLQLSGXXXXXXXXXXXXXXXXXXXXXXXVRANQVPSEPQISR 64
           MASM GL G+S AVLEGSL+++G                       VRA Q  SE + SR
Sbjct: 1   MASMGGLHGASPAVLEGSLKINGSSRLNGSGRVAVAQRSRLV----VRAQQ--SE-ETSR 53

Query: 65  RAVMGLVAAGLATGSFVQAVLAEAKSIKVXXXXXXXXXXXXTLNSDEARDLELPLKERFF 124
           R+V+GLVAAGLA GSFVQAVLA+A SIKV            T NSD+ARD  L LK+RF+
Sbjct: 54  RSVIGLVAAGLAGGSFVQAVLADAISIKVGPPPAPSGGLPGTDNSDQARDFALALKDRFY 113

Query: 125 LQPLSPTEAAQRAKESAKEIVAVKKFIDQKAWPYVQNDLRLRASYLRYDLNTVISSKPKD 184
           LQPL PTEAA RAKESAK+I+ VK  ID+KAWPYVQNDLR +ASYLRYDLNT+ISSKPKD
Sbjct: 114 LQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPKD 173

Query: 185 QKQSLKELSAKLFQDISNLDYAAKVKSSPQAEKYYAEAVSTLNDVLGKLG 234
           +K+SLK+L+ KLF  I NLDYAAK KS  QAEKYYAE VS LN+VL KLG
Sbjct: 174 EKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKLG 223


>AT4G21280.2 | Symbols: PSBQ, PSBQA, PSBQ-1 | photosystem II subunit
           QA | chr4:11334446-11335587 FORWARD LENGTH=224
          Length = 224

 Score =  257 bits (657), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 144/231 (62%), Positives = 165/231 (71%), Gaps = 8/231 (3%)

Query: 5   MASMAGLRGSSQAVLEGSLQLSGXXXXXXXXXXXXXXXXXXXXXXXVRANQVPSEPQISR 64
           MASM GL G+S AVLEGSL+++G                       VRA Q  SE + SR
Sbjct: 1   MASMGGLHGASPAVLEGSLKINGSSRLNGSGRVAVAQRSRLV----VRAQQ--SE-ETSR 53

Query: 65  RAVMGLVAAGLATGSFVQAVLAEAKSIKVXXXXXXXXX-XXXTLNSDEARDLELPLKERF 123
           R+V+GLVAAGLA GSFVQAVLA+A SIKV             T NSD+ARD  L LK+RF
Sbjct: 54  RSVIGLVAAGLAGGSFVQAVLADAISIKVGPPPAPSGGLPAGTDNSDQARDFALALKDRF 113

Query: 124 FLQPLSPTEAAQRAKESAKEIVAVKKFIDQKAWPYVQNDLRLRASYLRYDLNTVISSKPK 183
           +LQPL PTEAA RAKESAK+I+ VK  ID+KAWPYVQNDLR +ASYLRYDLNT+ISSKPK
Sbjct: 114 YLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPK 173

Query: 184 DQKQSLKELSAKLFQDISNLDYAAKVKSSPQAEKYYAEAVSTLNDVLGKLG 234
           D+K+SLK+L+ KLF  I NLDYAAK KS  QAEKYYAE VS LN+VL KLG
Sbjct: 174 DEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKLG 224


>AT1G14150.1 | Symbols: PQL1, PQL2 | PsbQ-like 2 |
           chr1:4839885-4840632 FORWARD LENGTH=190
          Length = 190

 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 69/116 (59%)

Query: 119 LKERFFLQPLSPTEAAQRAKESAKEIVAVKKFIDQKAWPYVQNDLRLRASYLRYDLNTVI 178
           +KE++F+  LSP +AA R K++A+ +  +++ +D  +W YV   +RL+ +YL  DL   +
Sbjct: 75  IKEKYFMPGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAM 134

Query: 179 SSKPKDQKQSLKELSAKLFQDISNLDYAAKVKSSPQAEKYYAEAVSTLNDVLGKLG 234
           +  P+ ++    + + +L +++S LD+  +     ++  YY + + ++++V+  L 
Sbjct: 135 NILPESRRNDYVQAANELVENMSELDFYVRTPKVYESYLYYEKTLKSIDNVVEFLA 190


>AT3G01440.1 | Symbols: PQL1, PQL2 | PsbQ-like 1 |
           chr3:168478-169407 FORWARD LENGTH=220
          Length = 220

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 87/182 (47%), Gaps = 6/182 (3%)

Query: 55  QVPSEPQISRRAVMGL-VAAGLATGSFVQ--AVLAEAKSIKVXXXXXXXXXXXXTLNSDE 111
           Q P   QI+RR  +G  V+ GL TG   +    LA+     +             +N  E
Sbjct: 41  QEPDSVQITRRMTLGFAVSIGL-TGILGENNVSLAQDNGFWIDGPLPIPPIYNNIVN--E 97

Query: 112 ARDLELPLKERFFLQPLSPTEAAQRAKESAKEIVAVKKFIDQKAWPYVQNDLRLRASYLR 171
                  +K+  ++  +       R K++A +++A++  I      YV+  LRL++++L 
Sbjct: 98  KTGTRTFIKKGVYVADIGTKGRMYRVKKNAFDLLAMEDLIGPDTLNYVKKYLRLKSTFLF 157

Query: 172 YDLNTVISSKPKDQKQSLKELSAKLFQDISNLDYAAKVKSSPQAEKYYAEAVSTLNDVLG 231
           YD + +IS+   + KQ L +L+ +LF +   L+ AAK K+  + E  Y +    L +V+ 
Sbjct: 158 YDFDNLISAAASEDKQPLTDLANRLFDNFEKLEDAAKTKNLAETESCYKDTKFLLQEVMT 217

Query: 232 KL 233
           ++
Sbjct: 218 RM 219


>AT1G14150.2 | Symbols: PQL1, PQL2 | PsbQ-like 2 |
           chr1:4839885-4840373 FORWARD LENGTH=162
          Length = 162

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 53/85 (62%)

Query: 119 LKERFFLQPLSPTEAAQRAKESAKEIVAVKKFIDQKAWPYVQNDLRLRASYLRYDLNTVI 178
           +KE++F+  LSP +AA R K++A+ +  +++ +D  +W YV   +RL+ +YL  DL   +
Sbjct: 75  IKEKYFMPGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAM 134

Query: 179 SSKPKDQKQSLKELSAKLFQDISNL 203
           +  P+ ++    + + +L +++S +
Sbjct: 135 NILPESRRNDYVQAANELVENMSEV 159


>AT2G01918.1 | Symbols: PQL3 | PsbQ-like 3 | chr2:424254-425678
           REVERSE LENGTH=187
          Length = 187

 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 58/110 (52%), Gaps = 2/110 (1%)

Query: 126 QPLSPTEAAQRA-KESAKEIVAVKKF-IDQKAWPYVQNDLRLRASYLRYDLNTVISSKPK 183
           +P    E AQ   +++A+ I  +K+  I++K W     +LR  AS ++ D   +I +KP 
Sbjct: 78  EPERTVELAQEGLRKNAENIKRIKEIMIEKKLWKEGGKELRRSASNMKQDFYLIIQAKPP 137

Query: 184 DQKQSLKELSAKLFQDISNLDYAAKVKSSPQAEKYYAEAVSTLNDVLGKL 233
             +   + L + LF  I+ +DYAA+     +  +YY   V+ L+D+  ++
Sbjct: 138 KDRPLFRSLYSSLFNSITKMDYAARDGDETKVLEYYINIVAILDDIFPRI 187