Miyakogusa Predicted Gene

Lj3g3v0478170.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0478170.1 Non Chatacterized Hit- tr|H2YXV1|H2YXV1_CIOSA
Uncharacterized protein OS=Ciona savignyi GN=Csa.9450
,39.29,2e-16,RNA-binding domain, RBD,NULL; RRM_1,RNA recognition motif
domain; PWI,Splicing factor PWI; no descri,CUFF.41007.1
         (689 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G12640.1 | Symbols:  | RNA binding (RRM/RBD/RNP motifs) famil...   379   e-105
AT5G65260.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    83   7e-16
AT5G51120.2 | Symbols: PABN1 | polyadenylate-binding protein 1 |...    79   1e-14
AT5G51120.1 | Symbols: PABN1, ATPABN1 | polyadenylate-binding pr...    76   7e-14
AT2G24350.1 | Symbols:  | RNA binding (RRM/RBD/RNP motifs) famil...    73   6e-13
AT5G51120.3 | Symbols: PABN1 | polyadenylate-binding protein 1 |...    73   8e-13
AT5G10350.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    68   2e-11
AT5G10350.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    67   3e-11
AT2G27330.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    60   7e-09
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei...    58   2e-08
AT3G50670.1 | Symbols: U1-70K, U1SNRNP | U1 small nuclear ribonu...    57   3e-08
AT4G19610.1 | Symbols:  | nucleotide binding;nucleic acid bindin...    55   1e-07
AT5G10350.3 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    54   5e-07
AT1G22910.3 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    53   8e-07
AT1G22910.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    53   9e-07
AT1G22910.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    52   1e-06
AT1G22330.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    52   1e-06
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei...    51   2e-06
AT1G01080.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    50   4e-06
AT1G01080.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    50   5e-06
AT1G20880.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    50   6e-06
AT1G20880.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    50   6e-06

>AT3G12640.1 | Symbols:  | RNA binding (RRM/RBD/RNP motifs) family
           protein | chr3:4014455-4017675 FORWARD LENGTH=638
          Length = 638

 Score =  379 bits (974), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 281/714 (39%), Positives = 370/714 (51%), Gaps = 104/714 (14%)

Query: 1   MGSIDRSDRRKFRTDFTAEGVAVLREKVNEKLKEFMGDYTDDTLVEYVIVLLRNGRDKDQ 60
           MGS D  D R F  DF+ EGVA L+E V +KLKE+MGDYTDD LVEYVIVLLRNGR K++
Sbjct: 1   MGSADLVDDRTFNGDFSVEGVAKLKEMVKDKLKEYMGDYTDDILVEYVIVLLRNGRRKEE 60

Query: 61  AKNELNVFLGDDSDSFVAWLWDHLALNIDLYVQSKELQDEAPKRKLISEVQAGGDGFQHL 120
           A NEL +FLGDDSDSFVAWLWDHLA ++D Y  S  ++    K  LIS  +        L
Sbjct: 61  ANNELKIFLGDDSDSFVAWLWDHLAESVDEYFSSN-VEGTTIKSSLISSHE--DKALVPL 117

Query: 121 NSQSERVESNKLSRSRRNKDWKGLVGRDTEAPYLWNSEVDNVHLEEKDRSKVNRGPRLQS 180
           +S+ ++  S+K + +RR + W+      +E P L +SE  +                   
Sbjct: 118 DSEYDKGRSDKSNGARRGRQWRSQPTNVSEIPPLLSSEAQS------------------- 158

Query: 181 PPSPVQRKRRRSVDQQKTKRDSGSQVTIHAPRRLLQFAVRDAVATSRPYNSGTPVETXXX 240
                QRKR R+ D +  +R++   V+    RRLLQFAVRDA+A SRP NS T  E+   
Sbjct: 159 -----QRKRSRTDDSRNEQREAKPDVS----RRLLQFAVRDALAISRPANSST--ESSLK 207

Query: 241 XXXXXXXXXXXXXXXXEHPQRMQTT-RVANPTSTVLKAVPEAAEDAVKFKYSGSVFDRLG 299
                           +  +++++  RV NP +TV+KAV EAAEDA K K   SVFDR  
Sbjct: 208 RLRSVVSTSTQNSSDPDPARKIRSVARVVNPMATVMKAVAEAAEDAKKPKSGRSVFDR-- 265

Query: 300 CNINRSDGNRKLDDDY----------------QHQEQSQLLYLQRTDYGDQYAGNMSTFQ 343
             I+ S G+  LD +                 Q QE  QL Y Q       Y  NM+T  
Sbjct: 266 --ISHSTGSETLDQNMVLGEVSPKDEESRNFSQGQEAVQLQYTQSLANNGVYFENMTT-- 321

Query: 344 HETAFLSDSTSDDEGFDDVNVMGHRVSRASQLGSSGGNRGDDSLMVHYSVAKNDDENVSL 403
           ++T    D +SD         +G  V+  S   +  GNR ++   + + +    D++  +
Sbjct: 322 NDTGLNPDFSSDR------GRLGSSVN-VSHPSTYLGNRINNPNSLQHRLV---DDSKRV 371

Query: 404 ERNRDQEQSAVTPNTSKIVNISVNVNTWKPPGPAQCQEPRKVAELDGQKTLNSNIGAPRS 463
           +    Q +        K  + S N++T K     + +E RK+ ++  Q+ ++        
Sbjct: 372 KGTNYQNRLPEVATKHKTASFSGNIDTGK---TVKLEEQRKIPDVGLQRYMD-------- 420

Query: 464 DPRLVKENARALKTNHGNVNSTLDLKKAPPKAQL---LTAGPSAAGHL-----LEDADSR 515
           + RLV   A    +    +  T+      P A +    T   S  G L     LEDA SR
Sbjct: 421 EGRLVSSEATTQLSTQKILGDTIGNGNVKPAASVKEESTTNKSVPGTLSTTRPLEDASSR 480

Query: 516 TIFASNVHFAATKDGLSRHFNKFGEVLKVVIVTDAMTGQPKGAAYVEFMSKEAADNALSL 575
           TIF +NVHF ATKD LSRHFNKFGEVLK  IVTD  TGQP G+AY+EF  KEAA+NALSL
Sbjct: 481 TIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENALSL 540

Query: 576 DGTSFMSRILKVVRKS-AAPQEYAPALPWPRGVRGSPFPSARFSRAP-FPRGVVGAFSPR 633
           DGTSFMSRILK+V+ S    QE A ++ W RG         RF+RAP + RG  GA   R
Sbjct: 541 DGTSFMSRILKIVKGSNGQNQEAASSMSWSRG--------GRFTRAPSYFRG--GAVRGR 590

Query: 634 PPVKFGSRSLQWKRDAQGIXXXXXXXXXXXXXXXPGARGLTYVRTESKLDASLN 687
             V+ G RS+QWKRD+                    AR LTYVR ESK D   N
Sbjct: 591 SVVRGGGRSMQWKRDS-------ADTGNNNNVAPNNARSLTYVRAESKSDGVAN 637


>AT5G65260.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:26080501-26082984 REVERSE LENGTH=220
          Length = 220

 Score = 82.8 bits (203), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 64/113 (56%), Gaps = 6/113 (5%)

Query: 510 EDADSRTIFASNVHFAATKDGLSRHFNKFGEVLKVVIVTDAMTGQPKGAAYVEFMSKEAA 569
           E+ D+R++F  NV +A T + + +HF   G V +V I+TD   GQPKG AYVEF+  EA 
Sbjct: 87  EEVDARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKF-GQPKGFAYVEFVEVEAV 145

Query: 570 DNALSLDGTSFMSRILKVVRKSAAPQEYAPALPWPRGVRGSPFPSARFSRAPF 622
             AL L+ +    R LKV++K        P L   RG R +P+   RF R PF
Sbjct: 146 QEALQLNESELHGRQLKVLQKRTN----VPGLKQFRGRRFNPYMGYRFRR-PF 193


>AT5G51120.2 | Symbols: PABN1 | polyadenylate-binding protein 1 |
           chr5:20779760-20781241 FORWARD LENGTH=265
          Length = 265

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 16/165 (9%)

Query: 475 LKTNHGNVNSTLDLKKAPPKAQLLTAGPSAAGHLLEDADSRTIFASNVHFAATKDGLSRH 534
           L++   ++N + +L +   + +++ +G SAA    E+ DSR+I+  NV +A T + + +H
Sbjct: 103 LESFSESMNLSRNLLEFEYEKEIINSGVSAAEK--EEVDSRSIYVGNVDYACTPEEVQQH 160

Query: 535 FNKFGEVLKVVIVTDAMTGQPKGAAYVEFMSKEAADNALSLDGTSFMSRILKVVRKSAAP 594
           F   G V +V I+TD   GQPKG AYVEF+  EA  N+L L+ +    R +KV    +A 
Sbjct: 161 FQSCGTVNRVTILTDKF-GQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKV----SAK 215

Query: 595 QEYAPALPWPRGVRGSPFPSARFSRAPFPRGVVGAFSPRPPVKFG 639
           +   P +   RG RG PF           RG +      PP  +G
Sbjct: 216 RTNVPGMRQFRG-RGRPFRPM--------RGFMPGVPFYPPYAYG 251


>AT5G51120.1 | Symbols: PABN1, ATPABN1 | polyadenylate-binding
           protein 1 | chr5:20779760-20781241 FORWARD LENGTH=227
          Length = 227

 Score = 76.3 bits (186), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 52/145 (35%), Positives = 75/145 (51%), Gaps = 14/145 (9%)

Query: 468 VKENARALKTNHGNVNSTLDLKKAPPKAQLLTAGPSAAGHLLEDADSRTIFASNVHFAAT 527
           ++E A AL+         +   + P      + G SAA    E+ DSR+I+  NV +A T
Sbjct: 64  IEEEAGALREMQAKAEKDMGASQDP------SGGVSAAEK--EEVDSRSIYVGNVDYACT 115

Query: 528 KDGLSRHFNKFGEVLKVVIVTDAMTGQPKGAAYVEFMSKEAADNALSLDGTSFMSRILKV 587
            + + +HF   G V +V I+TD   GQPKG AYVEF+  EA  N+L L+ +    R +KV
Sbjct: 116 PEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKV 174

Query: 588 VRKSAAPQEYAPALPWPRGVRGSPF 612
               +A +   P +   RG RG PF
Sbjct: 175 ----SAKRTNVPGMRQFRG-RGRPF 194


>AT2G24350.1 | Symbols:  | RNA binding (RRM/RBD/RNP motifs) family
           protein | chr2:10361239-10364223 FORWARD LENGTH=537
          Length = 537

 Score = 73.2 bits (178), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 40/92 (43%), Positives = 57/92 (61%), Gaps = 8/92 (8%)

Query: 512 ADSRTIFASNVHFAATKDGLSRHFN-KFGEVLKVVIVTDAMTGQPKGAAYVEFMSKEAAD 570
           ++SR I  +NV++AA K+ +S  F+ K G V  V++VTD +T  PKG A+V F +KE+  
Sbjct: 441 SESRVIHVTNVYYAAKKEAISMFFSSKCGAVQNVIVVTDPVTRHPKGTAFVTFATKESVG 500

Query: 571 NALSLDGTSFMSRILKVVRK-------SAAPQ 595
            A++L GT F SR +KV          SAAPQ
Sbjct: 501 KAVALSGTMFYSRPIKVRMHVIASGVVSAAPQ 532



 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 1/69 (1%)

Query: 17 TAEGVAVLREKVNEKLKEFMGDYTDDTLVEYVIVLLRNGRDKDQAKNELNVFLGDDSDSF 76
           +E  + L+  +++ L  F  DY+DD L EYV VL+ NG+ + QA  +L  FL + S  F
Sbjct: 15 VSESASRLKTIISDMLPRFTDDYSDD-LSEYVTVLVCNGKSQRQASEDLEAFLKEQSWKF 73

Query: 77 VAWLWDHLA 85
          V  LW+ L 
Sbjct: 74 VVCLWELLV 82


>AT5G51120.3 | Symbols: PABN1 | polyadenylate-binding protein 1 |
           chr5:20779346-20781241 FORWARD LENGTH=142
          Length = 142

 Score = 72.8 bits (177), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 60/103 (58%), Gaps = 6/103 (5%)

Query: 510 EDADSRTIFASNVHFAATKDGLSRHFNKFGEVLKVVIVTDAMTGQPKGAAYVEFMSKEAA 569
           E+ DSR+I+  NV +A T + + +HF   G V +V I+TD   GQPKG AYVEF+  EA 
Sbjct: 13  EEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEVEAV 71

Query: 570 DNALSLDGTSFMSRILKVVRKSAAPQEYAPALPWPRGVRGSPF 612
            N+L L+ +    R +KV    +A +   P +   RG RG PF
Sbjct: 72  QNSLILNESELHGRQIKV----SAKRTNVPGMRQFRG-RGRPF 109


>AT5G10350.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:3255674-3257746 REVERSE LENGTH=217
          Length = 217

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 60/120 (50%), Gaps = 8/120 (6%)

Query: 468 VKENARALKTNHGNVNSTLDLKKAPPKAQLLTAGPSAAGHLLEDADSRTIFASNVHFAAT 527
           ++E A AL+     V   +   + P       A  +A     E+ D+R+++  NV +A T
Sbjct: 49  MEEEAAALREMQAKVEKEMGATQDP-------ASMAANQEGKEEVDARSVYVGNVDYACT 101

Query: 528 KDGLSRHFNKFGEVLKVVIVTDAMTGQPKGAAYVEFMSKEAADNALSLDGTSFMSRILKV 587
            + +  HF   G V +V I+ D   GQPKG AYVEF+  EA   AL L+ +    R LKV
Sbjct: 102 PEEVQLHFQTCGTVNRVTILMDKF-GQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKV 160


>AT5G10350.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:3255808-3257746 REVERSE LENGTH=202
          Length = 202

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 60/120 (50%), Gaps = 8/120 (6%)

Query: 468 VKENARALKTNHGNVNSTLDLKKAPPKAQLLTAGPSAAGHLLEDADSRTIFASNVHFAAT 527
           ++E A AL+     V   +   + P       A  +A     E+ D+R+++  NV +A T
Sbjct: 49  MEEEAAALREMQAKVEKEMGATQDP-------ASMAANQEGKEEVDARSVYVGNVDYACT 101

Query: 528 KDGLSRHFNKFGEVLKVVIVTDAMTGQPKGAAYVEFMSKEAADNALSLDGTSFMSRILKV 587
            + +  HF   G V +V I+ D   GQPKG AYVEF+  EA   AL L+ +    R LKV
Sbjct: 102 PEEVQLHFQTCGTVNRVTILMDKF-GQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKV 160


>AT2G27330.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr2:11695350-11696563 REVERSE LENGTH=116
          Length = 116

 Score = 59.7 bits (143), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 45/66 (68%)

Query: 508 LLEDADSRTIFASNVHFAATKDGLSRHFNKFGEVLKVVIVTDAMTGQPKGAAYVEFMSKE 567
           L   + S T+F   + F++T++ L++ F+++G+VLKV ++ D +  +PKG AYV F SKE
Sbjct: 14  LFSRSFSSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKE 73

Query: 568 AADNAL 573
            A+ AL
Sbjct: 74  EAEKAL 79


>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
           | chr1:27915346-27916857 FORWARD LENGTH=289
          Length = 289

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 42/74 (56%)

Query: 514 SRTIFASNVHFAATKDGLSRHFNKFGEVLKVVIVTDAMTGQPKGAAYVEFMSKEAADNAL 573
           S  IF   + ++  + GL   F+K+GEV+   I+ D  TG+ +G A+V F S E A NA+
Sbjct: 33  SSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM 92

Query: 574 SLDGTSFMSRILKV 587
            LDG     R ++V
Sbjct: 93  QLDGQDLHGRRIRV 106


>AT3G50670.1 | Symbols: U1-70K, U1SNRNP | U1 small nuclear
           ribonucleoprotein-70K | chr3:18826476-18829492 REVERSE
           LENGTH=427
          Length = 427

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 63/146 (43%), Gaps = 28/146 (19%)

Query: 431 WKPPGPAQCQEPRKVAELDGQKTLNSNIGAPRSDPRLV------------KENARALKTN 478
           +KPP      E RK     G     SN   P  DP               +E    L+  
Sbjct: 58  YKPP-----PEKRKCPPYTGMAQFVSNFAEP-GDPEYAPPKPEVELPSQKRERIHKLRLE 111

Query: 479 HGNVNSTLDLKKAPPKAQLLTAGPSAAGHLLEDADSRTIFASNVHFAATKDGLSRHFNKF 538
            G   +  DLKK  P        P+A G        +T+F S +++ +++  + R F  +
Sbjct: 112 KGVEKAAEDLKKYDP-----NNDPNATGDPY-----KTLFVSRLNYESSESKIKREFESY 161

Query: 539 GEVLKVVIVTDAMTGQPKGAAYVEFM 564
           G + +V +VTD +T +PKG A++E+M
Sbjct: 162 GPIKRVHLVTDQLTNKPKGYAFIEYM 187


>AT4G19610.1 | Symbols:  | nucleotide binding;nucleic acid
           binding;RNA binding | chr4:10677482-10681623 FORWARD
           LENGTH=816
          Length = 816

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 47/77 (61%), Gaps = 1/77 (1%)

Query: 513 DSRTIFASNVHFAATKDGLSRHFNKFGEVLKVVIVTDAMTGQPKGAAYVEFMSKEAADNA 572
           D+  +F  N+ + AT++ L  HF+ FG++ +V +V D  T + +G AY+ ++  E A  A
Sbjct: 292 DTGRLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARA 351

Query: 573 L-SLDGTSFMSRILKVV 588
           +  LD +SF  R+L ++
Sbjct: 352 MEELDNSSFQGRLLHIL 368


>AT5G10350.3 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:3255674-3256463 REVERSE LENGTH=128
          Length = 128

 Score = 53.5 bits (127), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 44/128 (34%), Positives = 62/128 (48%), Gaps = 19/128 (14%)

Query: 521 NVHFAATKDGLSRHFNKFGEVLKVVIVTDAMTGQPKGAAYVEFMSKEAADNALSLDGTSF 580
           +V +A T + +  HF   G V +V I+ D   GQPKG AYVEF+  EA   AL L+ +  
Sbjct: 6   HVDYACTPEEVQLHFQTCGTVNRVTILMDKF-GQPKGFAYVEFVEVEAVQEALQLNESEL 64

Query: 581 MSRILKVV-RKSAAP--QEYAPALPWPRGVRGSPFPSARFSRAPF-------PRGVVGAF 630
             R LKV  +++  P  ++Y P        R +P    RF R PF       P G   A 
Sbjct: 65  HGRQLKVSPKRTNVPGMKQYHPG-------RFNPSMGYRFRR-PFVPPYFYSPYGYGKAP 116

Query: 631 SPRPPVKF 638
             R P+++
Sbjct: 117 RFRRPMRY 124


>AT1G22910.3 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:8105808-8107949 FORWARD LENGTH=347
          Length = 347

 Score = 52.8 bits (125), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 39/70 (55%)

Query: 504 AAGHLLEDADSRTIFASNVHFAATKDGLSRHFNKFGEVLKVVIVTDAMTGQPKGAAYVEF 563
           A G  L D     +F   + +   K+ + +HF +FGE+L+ V++TD  +G+ KG  +V F
Sbjct: 2   AGGIGLGDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTF 61

Query: 564 MSKEAADNAL 573
              EAA +A 
Sbjct: 62  REAEAARSAC 71


>AT1G22910.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:8105808-8107659 FORWARD LENGTH=249
          Length = 249

 Score = 52.8 bits (125), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 39/70 (55%)

Query: 504 AAGHLLEDADSRTIFASNVHFAATKDGLSRHFNKFGEVLKVVIVTDAMTGQPKGAAYVEF 563
           A G  L D     +F   + +   K+ + +HF +FGE+L+ V++TD  +G+ KG  +V F
Sbjct: 2   AGGIGLGDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTF 61

Query: 564 MSKEAADNAL 573
              EAA +A 
Sbjct: 62  REAEAARSAC 71


>AT1G22910.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:8105808-8107618 FORWARD LENGTH=242
          Length = 242

 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 39/70 (55%)

Query: 504 AAGHLLEDADSRTIFASNVHFAATKDGLSRHFNKFGEVLKVVIVTDAMTGQPKGAAYVEF 563
           A G  L D     +F   + +   K+ + +HF +FGE+L+ V++TD  +G+ KG  +V F
Sbjct: 2   AGGIGLGDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTF 61

Query: 564 MSKEAADNAL 573
              EAA +A 
Sbjct: 62  REAEAARSAC 71


>AT1G22330.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:7886693-7889241 FORWARD LENGTH=291
          Length = 291

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 12/106 (11%)

Query: 511 DADSRTIFASNVHFAATKDGLSRHFNKFGEVLKVVIVTDAMTGQPKGAAYVEFMSKEAAD 570
           D     +F   + +    D + R+F++FGE+L+ VI+TD  TG+ KG  +V F   ++A 
Sbjct: 13  DTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSAT 72

Query: 571 NALS-----LDGTSFMSRILKVVRKSAAPQEYAPALPWPRGVRGSP 611
            A++     +DG      I    R         P+ P  RG  GSP
Sbjct: 73  RAVADPNPVIDGRKANCNIASFGRPR-------PSTPRGRGQGGSP 111


>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
           | chr5:24560870-24562152 FORWARD LENGTH=309
          Length = 309

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 10/118 (8%)

Query: 474 ALKTNHGNVNSTLDLKKAPPK---AQLLTAGPSAAGHLLEDADSRTIFASNVHFAATKDG 530
           A  +  GN+     LK+   K   AQ+  + PS     +    S  +F   + ++  +D 
Sbjct: 2   AFLSKFGNI-----LKQTTNKQLNAQVSLSSPSLF-QAIRCMSSSKLFIGGMAYSMDEDS 55

Query: 531 LSRHFNKFGEVLKVVIVTDAMTGQPKGAAYVEFMSKEAADNAL-SLDGTSFMSRILKV 587
           L   F K+GEV+   ++ D  TG+ +G  +V F S EAA +A+ +LDG     R++KV
Sbjct: 56  LREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKV 113


>AT1G01080.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:45503-46789 REVERSE LENGTH=293
          Length = 293

 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 40/71 (56%)

Query: 517 IFASNVHFAATKDGLSRHFNKFGEVLKVVIVTDAMTGQPKGAAYVEFMSKEAADNALSLD 576
           ++  N+ +    DGL  HF+KFG ++   ++ D  TG+ +  A++ F S E  D ALS +
Sbjct: 214 VYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFN 273

Query: 577 GTSFMSRILKV 587
           GT +  R + V
Sbjct: 274 GTQYEGRRIIV 284


>AT1G01080.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:45503-46789 REVERSE LENGTH=294
          Length = 294

 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 40/71 (56%)

Query: 517 IFASNVHFAATKDGLSRHFNKFGEVLKVVIVTDAMTGQPKGAAYVEFMSKEAADNALSLD 576
           ++  N+ +    DGL  HF+KFG ++   ++ D  TG+ +  A++ F S E  D ALS +
Sbjct: 215 VYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFN 274

Query: 577 GTSFMSRILKV 587
           GT +  R + V
Sbjct: 275 GTQYEGRRIIV 285


>AT1G20880.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:7262879-7264834 REVERSE LENGTH=274
          Length = 274

 Score = 50.1 bits (118), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 10/106 (9%)

Query: 502 PSAAGHLLE----DADSRTIFASNVHFAATKDGLSRHFNKFGEVLKVVIVTDAMTGQPKG 557
           PS+  H L     D     +F   + +    + L RHF+++G++L+ V++TD  TG+ KG
Sbjct: 7   PSSGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKG 66

Query: 558 AAYVEFMSKEAADNALSLDGTSFM-----SRILKVVRKSAAPQEYA 598
             +V F   EAA  A  +D T  +     +  L  + +S  P +YA
Sbjct: 67  YGFVTFRDPEAARRAC-VDPTPIIDGRRANCNLASLGRSRPPMQYA 111


>AT1G20880.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:7262879-7264834 REVERSE LENGTH=274
          Length = 274

 Score = 50.1 bits (118), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 10/106 (9%)

Query: 502 PSAAGHLLE----DADSRTIFASNVHFAATKDGLSRHFNKFGEVLKVVIVTDAMTGQPKG 557
           PS+  H L     D     +F   + +    + L RHF+++G++L+ V++TD  TG+ KG
Sbjct: 7   PSSGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKG 66

Query: 558 AAYVEFMSKEAADNALSLDGTSFM-----SRILKVVRKSAAPQEYA 598
             +V F   EAA  A  +D T  +     +  L  + +S  P +YA
Sbjct: 67  YGFVTFRDPEAARRAC-VDPTPIIDGRRANCNLASLGRSRPPMQYA 111