Miyakogusa Predicted Gene

Lj3g3v0478140.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0478140.1 Non Chatacterized Hit- tr|J3MFT7|J3MFT7_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB06G2,36.41,8e-16,SAE2,DNA repair protein Sae2/CtIP; seg,NULL;
coiled-coil,NULL; SUBFAMILY NOT NAMED,NULL; RETINOBLAST,CUFF.40885.1
         (606 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G52115.1 | Symbols: ATGR1, ATCOM1, COM1, GR1 | gamma response...   166   3e-41

>AT3G52115.1 | Symbols: ATGR1, ATCOM1, COM1, GR1 | gamma response
           gene 1 | chr3:19326333-19328245 FORWARD LENGTH=588
          Length = 588

 Score =  166 bits (421), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 75/110 (68%), Positives = 87/110 (79%), Gaps = 4/110 (3%)

Query: 497 DSSDDETQDLNAKSSPQKKQSSITVADKKSFKYIEPVRKKAERENLKGVECKQCRKFYDA 556
           D SDDETQD+N K SP +++  I    KKSFK++E VRKKAERENLKG+ECKQC+KFYDA
Sbjct: 483 DDSDDETQDMNPKPSPSRQRIQIAETSKKSFKHVESVRKKAERENLKGIECKQCKKFYDA 542

Query: 557 VLPNADGKDPDNSKQNFRCEHLDGVSRHRYRYVPPMTPEGFWNIGFESEM 606
           V P  +G    N  ++ RCEH +GVSRHRYRY PPMTPEGFWNIGFESEM
Sbjct: 543 VHPENEG----NGNKSLRCEHHEGVSRHRYRYAPPMTPEGFWNIGFESEM 588



 Score = 99.4 bits (246), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 59/135 (43%), Positives = 81/135 (60%), Gaps = 12/135 (8%)

Query: 354 PSSSFYVRPKCPSSAKVASVSGTKRPAPSWRLTRSHQSRAGPDPHDDFLDTPLENIRVNL 413
           P +S     + P +AK   +SG KRPA  WR TRS QS  G DPHDDFLDTP+EN++   
Sbjct: 411 PITSISPIVRSPGAAKPPQLSGLKRPASIWRDTRSRQSPGGHDPHDDFLDTPIENVKRVA 470

Query: 414 NKDLNKADLPCPIQKDISMNSSDDETQDLNAESSPQKKQSSITVADKRSFKYIEPVMKKA 473
            ++ +  D+    +KD     SDDETQD+N + SP +++  I    K+SFK++E V KKA
Sbjct: 471 GEEKHVHDVA---KKD----DSDDETQDMNPKPSPSRQRIQIAETSKKSFKHVESVRKKA 523

Query: 474 ELEHLNKDLKPGLPC 488
           E E+L      G+ C
Sbjct: 524 ERENLK-----GIEC 533



 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 32/41 (78%), Positives = 39/41 (95%)

Query: 32 KLISGLSTILVASIQEARDRISQIEYVFCSQIYPHFQSTSK 72
          K ISGLSTI+VA+IQEA+DRISQIEY+FCSQ++P+FQS SK
Sbjct: 12 KYISGLSTIMVATIQEAKDRISQIEYIFCSQLFPNFQSKSK 52