Miyakogusa Predicted Gene

Lj3g3v0478010.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0478010.1 Non Chatacterized Hit- tr|I3SC15|I3SC15_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=4 SV=1,96.51,2e-38,U6
SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM7,NULL; SMALL NUCLEAR
RIBONUCLEOPROTEIN,NULL; Sm-like ribonuc,CUFF.40880.1
         (86 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G03870.1 | Symbols:  | Small nuclear ribonucleoprotein family...   162   6e-41
AT2G03870.2 | Symbols:  | Small nuclear ribonucleoprotein family...   162   6e-41
AT2G23930.1 | Symbols: SNRNP-G | probable small nuclear ribonucl...    58   2e-09
AT3G11500.1 | Symbols:  | Small nuclear ribonucleoprotein family...    57   3e-09
AT2G23930.2 | Symbols: SNRNP-G | probable small nuclear ribonucl...    50   2e-07

>AT2G03870.1 | Symbols:  | Small nuclear ribonucleoprotein family
          protein | chr2:1180306-1181256 FORWARD LENGTH=99
          Length = 99

 Score =  162 bits (409), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 82/86 (95%), Positives = 83/86 (96%)

Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEF+RD DDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKT 60

Query: 61 TAQTRSLGLIVCRGTAVMLVSPTDGT 86
          T QTR LGLIVCRGTAVMLVSPTDGT
Sbjct: 61 TDQTRRLGLIVCRGTAVMLVSPTDGT 86


>AT2G03870.2 | Symbols:  | Small nuclear ribonucleoprotein family
          protein | chr2:1180306-1181256 FORWARD LENGTH=99
          Length = 99

 Score =  162 bits (409), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 82/86 (95%), Positives = 83/86 (96%)

Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEF+RD DDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKT 60

Query: 61 TAQTRSLGLIVCRGTAVMLVSPTDGT 86
          T QTR LGLIVCRGTAVMLVSPTDGT
Sbjct: 61 TDQTRRLGLIVCRGTAVMLVSPTDGT 86


>AT2G23930.1 | Symbols: SNRNP-G | probable small nuclear
          ribonucleoprotein G | chr2:10182353-10183026 FORWARD
          LENGTH=80
          Length = 80

 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 9/71 (12%)

Query: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTAQTRSLGL 69
          DL K++DK +Q+KL   R VTGTL+G+DQ +NLV+D  VE                 +G+
Sbjct: 9  DLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEV---------NGNDKTDIGM 59

Query: 70 IVCRGTAVMLV 80
          +V RG +++ V
Sbjct: 60 VVIRGNSIVTV 70


>AT3G11500.1 | Symbols:  | Small nuclear ribonucleoprotein family
          protein | chr3:3621626-3622474 REVERSE LENGTH=79
          Length = 79

 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 9/72 (12%)

Query: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTAQTRSLGL 69
          DL K++DK +Q+KL   R V GTL+G+DQ +NLV+D  VE   + DD  KT      +G+
Sbjct: 9  DLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEV--NGDD--KT-----DIGM 59

Query: 70 IVCRGTAVMLVS 81
          +V RG +++ V 
Sbjct: 60 VVIRGNSIVTVE 71


>AT2G23930.2 | Symbols: SNRNP-G | probable small nuclear
          ribonucleoprotein G | chr2:10182496-10183026 FORWARD
          LENGTH=67
          Length = 67

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 9/68 (13%)

Query: 15 VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTAQTRSLGLIVCRG 74
          +DK +Q+KL   R VTGTL+G+DQ +NLV+D  VE   + +D  KT      +G++V RG
Sbjct: 1  MDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEV--NGND--KT-----DIGMVVIRG 51

Query: 75 TAVMLVSP 82
           +++ V  
Sbjct: 52 NSIVTVEA 59