Miyakogusa Predicted Gene

Lj3g3v0463540.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0463540.1 Non Chatacterized Hit- tr|D8SBK6|D8SBK6_SELML
Putative uncharacterized protein OS=Selaginella
moelle,35.59,0.006,seg,NULL,CUFF.40849.1
         (237 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G39630.1 | Symbols:  | unknown protein; Has 30201 Blast hits ...   198   3e-51

>AT4G39630.1 | Symbols:  | unknown protein; Has 30201 Blast hits to
           17322 proteins in 780 species: Archae - 12; Bacteria -
           1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
           Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
           BLink). | chr4:18397749-18399263 REVERSE LENGTH=233
          Length = 233

 Score =  198 bits (504), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 110/235 (46%), Positives = 150/235 (63%), Gaps = 7/235 (2%)

Query: 1   MPRRXXXXXXVKPLPEPNDPQIQTQQQNHTHFINHEIEAMERQIGAIRAVRDVKIENLLT 60
           MP+R           + ND +    ++    F++ E+E   RQI AIRA+RDV+IE +LT
Sbjct: 1   MPKRKAKECVKLTEEDRNDEKRIRIEEKKEDFVDEEVE---RQIAAIRAIRDVEIEQMLT 57

Query: 61  ELRLLRSCFSEEQLTKPVLEVFEETLPNLEIVSDEGSKKFEVAWKEKESMNMSC-ADGRD 119
            LRLLRS F+EEQL  PVL+ F+E LP+L I  +E + + E+ W+++   + +   +G D
Sbjct: 58  ALRLLRSYFTEEQLHTPVLDFFKENLPDLSISRNEETGEIELKWRDENGDSFAGNENGVD 117

Query: 120 LHVSLLQRLSMAYPQCSASVPHLGGFEYSSNAGGTSFLGADNVHLKDMVFEAPSETQTLA 179
           ++ S+L+RLSM +     S   LGG++   N    + LG DN  L ++VF+  SE Q L 
Sbjct: 118 MNYSILKRLSMRFTDL-YSRSSLGGYDLPDNVKA-NLLGTDNPQLDNLVFQGTSENQMLP 175

Query: 180 MQEGLQTPGVTSQRLSVGMTPKTLRLPKPGEMLLSVHGSPLGVFKEN-NMEAINE 233
             +  QTPGV  QRLS GMTPKTLRLPK GEM+LSVHGSPLGV+KE+ NM AINE
Sbjct: 176 GHDAFQTPGVNGQRLSFGMTPKTLRLPKAGEMMLSVHGSPLGVYKEDHNMGAINE 230