Miyakogusa Predicted Gene

Lj3g3v0463480.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0463480.1 Non Chatacterized Hit- tr|D7LPV0|D7LPV0_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,71.15,0.000000000003,seg,NULL,
NODE_28965_length_487_cov_130.470230.path1.1
         (116 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G61530.1 | Symbols:  | small G protein family protein / RhoGA...   142   5e-35
AT5G61530.2 | Symbols:  | small G protein family protein / RhoGA...   141   7e-35
AT5G61530.3 | Symbols:  | small G protein family protein / RhoGA...   109   3e-25

>AT5G61530.1 | Symbols:  | small G protein family protein / RhoGAP
          family protein | chr5:24742630-24744586 FORWARD
          LENGTH=376
          Length = 376

 Score =  142 bits (357), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 66/95 (69%), Positives = 82/95 (86%)

Query: 1  MPSITSPQWQEKASGFFSSSGVKLKEARESAGTFVGEVTKDTKSNVAEVAGRVGSIVKSR 60
          MPS+ S QWQE+ SGFFSSSG KL+EA ++AG+FVGEV KD K NVA+VA RVGS+ KSR
Sbjct: 1  MPSLISQQWQERTSGFFSSSGTKLREAGQTAGSFVGEVAKDAKVNVADVAERVGSLFKSR 60

Query: 61 WTLLQQPSTRHAVQDKLISAAATTGSFLRRGISGT 95
          W +LQQP+TRHAVQ+ LI+AAATTG+F+R+GI+ T
Sbjct: 61 WAILQQPATRHAVQEHLITAAATTGTFVRKGITET 95


>AT5G61530.2 | Symbols:  | small G protein family protein / RhoGAP
          family protein | chr5:24742630-24744586 FORWARD
          LENGTH=367
          Length = 367

 Score =  141 bits (356), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 66/95 (69%), Positives = 82/95 (86%)

Query: 1  MPSITSPQWQEKASGFFSSSGVKLKEARESAGTFVGEVTKDTKSNVAEVAGRVGSIVKSR 60
          MPS+ S QWQE+ SGFFSSSG KL+EA ++AG+FVGEV KD K NVA+VA RVGS+ KSR
Sbjct: 1  MPSLISQQWQERTSGFFSSSGTKLREAGQTAGSFVGEVAKDAKVNVADVAERVGSLFKSR 60

Query: 61 WTLLQQPSTRHAVQDKLISAAATTGSFLRRGISGT 95
          W +LQQP+TRHAVQ+ LI+AAATTG+F+R+GI+ T
Sbjct: 61 WAILQQPATRHAVQEHLITAAATTGTFVRKGITET 95


>AT5G61530.3 | Symbols:  | small G protein family protein / RhoGAP
          family protein | chr5:24742405-24744586 FORWARD
          LENGTH=376
          Length = 376

 Score =  109 bits (273), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 51/75 (68%), Positives = 65/75 (86%)

Query: 21 GVKLKEARESAGTFVGEVTKDTKSNVAEVAGRVGSIVKSRWTLLQQPSTRHAVQDKLISA 80
          G KL+EA ++AG+FVGEV KD K NVA+VA RVGS+ KSRW +LQQP+TRHAVQ+ LI+A
Sbjct: 21 GTKLREAGQTAGSFVGEVAKDAKVNVADVAERVGSLFKSRWAILQQPATRHAVQEHLITA 80

Query: 81 AATTGSFLRRGISGT 95
          AATTG+F+R+GI+ T
Sbjct: 81 AATTGTFVRKGITET 95