Miyakogusa Predicted Gene

Lj3g3v0462320.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0462320.1 Non Chatacterized Hit- tr|I1N6G0|I1N6G0_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,50.49,7e-18,seg,NULL,NODE_65340_length_1037_cov_19.540020.path2.1
         (188 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G40080.1 | Symbols:  | ENTH/ANTH/VHS superfamily protein | ch...    59   2e-09

>AT4G40080.1 | Symbols:  | ENTH/ANTH/VHS superfamily protein |
           chr4:18579371-18580542 FORWARD LENGTH=365
          Length = 365

 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 67/132 (50%), Gaps = 10/132 (7%)

Query: 33  SAPPRVLASQTAAADGC----SEMLLHPPQRCRQGSFRLQGHAXXXXXXXXXXXXXXSNF 88
           SA   ++       D C    S +++H     + G F LQ                 S F
Sbjct: 74  SAVESIMERLHTTGDACVALKSLIIIH--HIVKHGRFILQDQLSVFPASGGRNYLKLSAF 131

Query: 89  REDTDFESLELSSWVRWYAGVVEQRLTASRVLGYYLTSSNSSIEKKNCTQDSKSLVLKMS 148
           R++      ELSSWVRWYA  +E  L+ SR++G++++S++S+I K    ++ + +V  ++
Sbjct: 132 RDEKSPLMWELSSWVRWYALYLEHLLSTSRIMGFFISSTSSTIHK----EEYEEMVSSLT 187

Query: 149 NTGLLYKLENMV 160
           N+ LL +++ +V
Sbjct: 188 NSDLLREIDALV 199