Miyakogusa Predicted Gene

Lj3g3v0462060.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0462060.1 Non Chatacterized Hit- tr|B9G098|B9G098_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,33.64,6e-18,coiled-coil,NULL,CUFF.40822.1
         (223 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G33500.1 | Symbols:  | unknown protein; Has 30201 Blast hits ...   162   2e-40

>AT1G33500.1 | Symbols:  | unknown protein; Has 30201 Blast hits to
           17322 proteins in 780 species: Archae - 12; Bacteria -
           1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
           Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
           BLink). | chr1:12152774-12154680 FORWARD LENGTH=276
          Length = 276

 Score =  162 bits (410), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 97/223 (43%), Positives = 136/223 (60%), Gaps = 27/223 (12%)

Query: 1   MEQYLQNMKTLRSQMNDVEDQAAKISAEEHMQLTNIRTLENDIESAKSEIAQVVEDTEKM 60
           ME+YLQ MKTLRSQM DVED AAK+S EE MQ+T I TLE D+E A SE  ++ E+T++ 
Sbjct: 1   MEEYLQYMKTLRSQMTDVEDHAAKVSVEEQMQVTTISTLEKDLEHALSETKRLKEETDQK 60

Query: 61  EKAKGEVCSKILKTQKKIASLESDTSKLTQTLGLIQQEIVGLSTKLSEKRAYYTKVSEDM 120
            + +GE+CS IL+ Q+KI+S+ESD+  + Q+L LI QE   LS KL  KR+ Y K +E+ 
Sbjct: 61  TRTRGEICSHILEKQRKISSMESDSVNIAQSLELILQERDSLSAKLVSKRSNYLKTAEEA 120

Query: 121 TAKLQNQQEWLRTKDSRDLKEHELDKLKVDGQKSQVEGKCDADGNLIVDNLGSDARNNLI 180
             KL+ Q+ W  +  S +            GQ+                    + RNNL+
Sbjct: 121 RTKLEEQKGWFISHMSNE-----------TGQQGH----------------KKETRNNLM 153

Query: 181 TELDSAKARLGEICTLKSKVLMENNKIKLAIEDVKCRGNEFKS 223
              DSA+A+L +   ++S +L EN+KIKL+IE+VK + NEFK 
Sbjct: 154 ELSDSARAKLDQAKLMRSNLLQENSKIKLSIENVKHKINEFKP 196