Miyakogusa Predicted Gene
- Lj3g3v0461410.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0461410.1 tr|A9RUJ7|A9RUJ7_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_70743
,30.67,3e-19,LEA_2,Late embryogenesis abundant protein, LEA-14;
seg,NULL; LEA14-like,NULL,NODE_43001_length_777_cov_36.882881.path1.1
(192 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G54200.1 | Symbols: | Late embryogenesis abundant (LEA) hydr... 149 1e-36
AT2G46150.1 | Symbols: | Late embryogenesis abundant (LEA) hydr... 97 6e-21
AT3G05975.1 | Symbols: | Late embryogenesis abundant (LEA) hydr... 75 3e-14
AT4G13270.1 | Symbols: | Late embryogenesis abundant (LEA) hydr... 62 2e-10
AT4G23930.1 | Symbols: | Late embryogenesis abundant (LEA) hydr... 60 1e-09
AT1G64065.1 | Symbols: | Late embryogenesis abundant (LEA) hydr... 53 1e-07
AT1G64450.1 | Symbols: | Glycine-rich protein family | chr1:239... 51 5e-07
AT1G52330.1 | Symbols: | Late embryogenesis abundant (LEA) hydr... 49 3e-06
>AT3G54200.1 | Symbols: | Late embryogenesis abundant (LEA)
hydroxyproline-rich glycoprotein family |
chr3:20065731-20066438 FORWARD LENGTH=235
Length = 235
Score = 149 bits (376), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/159 (50%), Positives = 119/159 (74%)
Query: 34 FKAKHPVTTVDSMKLEDVDVKLDIAKLRVDLNVTLDVNLSVKNPNKVGFKYSDSTAQLNY 93
FK K P TT+DS+ ++ + ++ L+V LN+TL+V+LS+KNPN++GF Y S+A LNY
Sbjct: 77 FKPKRPTTTIDSVTVDRLQASVNPLLLKVLLNLTLNVDLSLKNPNRIGFSYDSSSALLNY 136
Query: 94 RGQQIGEVPIPAGEISSDQTKGFNLTLTIMADRLLSNSQLFSDVTSGTLPLNTFSRISGK 153
RGQ IGE P+PA I++ +T N+TLT+MADRLLS +QL SDV +G +PLNTF +++GK
Sbjct: 137 RGQVIGEAPLPANRIAARKTVPLNITLTLMADRLLSETQLLSDVMAGVIPLNTFVKVTGK 196
Query: 154 VSIMGFIKVHVVSYTSCDIAVNISNRTVGNQECHYKTKL 192
V+++ K+ V S +SCD+++++S+R V +Q C Y TKL
Sbjct: 197 VTVLKIFKIKVQSSSSCDLSISVSDRNVTSQHCKYSTKL 235
>AT2G46150.1 | Symbols: | Late embryogenesis abundant (LEA)
hydroxyproline-rich glycoprotein family |
chr2:18961424-18962089 FORWARD LENGTH=221
Length = 221
Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 96/161 (59%), Gaps = 2/161 (1%)
Query: 34 FKAKHPVTTVDSMKLEDVDVKLDIAKLRV-DLNVTLDVNLSVKNPNKVGFKYSDSTAQLN 92
F+ K P+ ++ + + +D ++++ N+++ V++SVKNPN FKYS++T +
Sbjct: 61 FRVKDPIIKMNGVMVNGLDSVTGTNQVQLLGTNISMIVDVSVKNPNTASFKYSNTTTDIY 120
Query: 93 YRGQQIGEVPIPAGEISSDQTKGFNLTLTIMADRLLSNSQLFSDVT-SGTLPLNTFSRIS 151
Y+G +GE G+ +T N+T+ IM DR+LS+ L +++ SG + + +++R+
Sbjct: 121 YKGTLVGEAHGLPGKARPHRTSRMNVTVDIMLDRILSDPGLGREISRSGLVNVWSYTRVG 180
Query: 152 GKVSIMGFIKVHVVSYTSCDIAVNISNRTVGNQECHYKTKL 192
GKV IMG +K HV +C +AVNI+ + + + +C K L
Sbjct: 181 GKVKIMGIVKKHVTVKMNCTMAVNITGQAIQDVDCKKKIDL 221
>AT3G05975.1 | Symbols: | Late embryogenesis abundant (LEA)
hydroxyproline-rich glycoprotein family |
chr3:1792145-1792714 REVERSE LENGTH=189
Length = 189
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 81/160 (50%), Gaps = 2/160 (1%)
Query: 34 FKAKHPVTTVDSMKLEDVDVKLDIAKLRVDLNVTLDVNLSVKNPNKVGFKYSDSTAQLNY 93
FK KHP+ S ++ + + + V LN TL + + +KNPN F+Y + Y
Sbjct: 31 FKPKHPILQTVSSTVDGISTNISLPY-EVQLNFTLTLEMLLKNPNVADFEYKTVENLVYY 89
Query: 94 RGQQIGEVPIPAGEISSDQTKGFNLTLTIMADRLLSN-SQLFSDVTSGTLPLNTFSRISG 152
R +G + +P+ + + + L + D+ ++N + DV G + + T +++ G
Sbjct: 90 RDTLVGNLTLPSSTLPAKGSVLLPCPLFLQLDKFVANLGDIVQDVLHGKIVMETRAKMPG 149
Query: 153 KVSIMGFIKVHVVSYTSCDIAVNISNRTVGNQECHYKTKL 192
K++++G K+ + S + C++ + + V +Q C KTKL
Sbjct: 150 KITLLGIFKIPLDSISHCNLVLGFPSMVVEDQVCDLKTKL 189
>AT4G13270.1 | Symbols: | Late embryogenesis abundant (LEA)
hydroxyproline-rich glycoprotein family |
chr4:7731280-7732902 FORWARD LENGTH=215
Length = 215
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 78/152 (51%), Gaps = 5/152 (3%)
Query: 39 PVTTVDSMKLEDVDVKLDIAKLRVDLNVTLDVNLSVKNPNKVGFKYSDSTAQLNYRGQQI 98
P TV + L + V +D K+ +DL+ +L + V+N + Y + YRG+++
Sbjct: 68 PDITVSRINLNHISV-VDSHKIALDLSFSLTIK--VRNRDFFSLDYDSLVVSIGYRGREL 124
Query: 99 GEVPIPAGEISSDQTKGFNLTLTIMADRLLSNS-QLFSDVTSGTLPLNTFSRISGKVSIM 157
G V G + + + + TL + ++ + L D+ G +P +T +++ G + ++
Sbjct: 125 GLVKSKGGHLKARDSSYIDATLELDGLEVVHDVIYLIGDLAKGVIPFDTIAQVQGDLGVL 184
Query: 158 GFIKVHVVSYTSCDIAVNISNRTVGNQECHYK 189
F + + SC++ VN++N+ + +Q+CH K
Sbjct: 185 LF-NIPIQGKVSCEVYVNVNNQKISHQDCHRK 215
>AT4G23930.1 | Symbols: | Late embryogenesis abundant (LEA)
hydroxyproline-rich glycoprotein family |
chr4:12436131-12436694 REVERSE LENGTH=187
Length = 187
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 77/161 (47%), Gaps = 14/161 (8%)
Query: 34 FKAKHPVTTVDSMKLEDVDVKLDIAKLRVDLNVTLDVNLSVKNPNKVGFKYSDSTAQLNY 93
F+ + P +V S+K+ V ++ T +V+NPN+ F + ++ QL Y
Sbjct: 33 FRPRDPEISVTSVKVPSFSVANS------SVSFTFSQFSAVRNPNRAAFSHYNNVIQLFY 86
Query: 94 RGQQIGEVPIPAGEISSDQTKGFNLTLTIMADRLLSNSQLF--------SDVTSGTLPLN 145
G +IG +PAGEI S +TK T ++ + L + S SD + T+ +
Sbjct: 87 YGNRIGYTFVPAGEIESGRTKRMLATFSVQSFPLAAASSSQISAAQFQNSDRSGSTVEIE 146
Query: 146 TFSRISGKVSIMGFIKVHVVSYTSCDIAVNISNRTVGNQEC 186
+ ++G+V ++G + + +C IA++ S+ ++ C
Sbjct: 147 SKLEMAGRVRVLGLFTHRIAAKCNCRIAISSSDGSIVAVRC 187
>AT1G64065.1 | Symbols: | Late embryogenesis abundant (LEA)
hydroxyproline-rich glycoprotein family |
chr1:23778628-23779272 FORWARD LENGTH=214
Length = 214
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 64/126 (50%), Gaps = 3/126 (2%)
Query: 64 LNVTLDVNLSVKNPNKVGFKYSDSTAQLNYRGQQ-IGEVPIPAGEISSDQT-KGFNLTLT 121
N TL ++S++N N F++ DST ++ Y +GE I + + +T + + +
Sbjct: 90 FNATLVSDISIRNSNFGAFEFEDSTLRVVYADHGVVGETKIEGRRVEAHKTVRITGVVVE 149
Query: 122 IMADRLLSNSQLFSDVTSGTLPLNTFSRISGKVSIMGFIKVHVVSYTSCDIAVNISNRTV 181
I + RLL L D+ G L L + + + G++ ++G K VS SC + +N++ R +
Sbjct: 150 IGSFRLLDTKDLDKDLRLGFLELRSVAEVRGRIKVLGR-KRWKVSVMSCTMRLNLTGRFI 208
Query: 182 GNQECH 187
N C
Sbjct: 209 QNLLCE 214
>AT1G64450.1 | Symbols: | Glycine-rich protein family |
chr1:23941758-23942786 REVERSE LENGTH=342
Length = 342
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 34 FKAKHPVTTVDSMKLEDVDVKLDIAKLRVDLNVTLDVNLSVKNPNKVGFKYSDSTAQLNY 93
FK K P +V++++L V + A N + ++V+NPN+ F + DS+ QL Y
Sbjct: 41 FKPKDPKISVNAVQLPSFAVSNNTA------NFSFSQYVAVRNPNRAVFSHYDSSIQLLY 94
Query: 94 RGQQIGEVPIPAGEISSDQTKGFNLTLTI 122
G Q+G + IPAG+I S + + T T+
Sbjct: 95 SGNQVGFMFIPAGKIDSGRIQYMAATFTV 123
>AT1G52330.1 | Symbols: | Late embryogenesis abundant (LEA)
hydroxyproline-rich glycoprotein family |
chr1:19488962-19489763 FORWARD LENGTH=214
Length = 214
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 62/124 (50%), Gaps = 2/124 (1%)
Query: 64 LNVTLDVNLSVKNPNKVGFKYSDSTAQLNYRGQQIGEVPIPAGEISSDQTKGFNLTLTIM 123
+++TL V L V N + F ++D ++YRG+ +G V G +++ + + +
Sbjct: 89 IDMTLLVTLKVSNADVYSFDFTDLDVTIDYRGKTLGHVSSDGGHVTAFGSSYLDAEAELD 148
Query: 124 ADRLLSNS-QLFSDVTSGTLPLNTFSRISGKVSIMGFIKVHVVSYTSCDIAVNISNRTVG 182
+ + L D+ G++ +T + +GK+ ++ F + + + +C I V+ N+T+
Sbjct: 149 GVMVFPDVIHLIHDLAKGSVEFDTVTETNGKLGVL-FFRFPLKAKVACGILVDTVNQTIS 207
Query: 183 NQEC 186
Q C
Sbjct: 208 RQSC 211