Miyakogusa Predicted Gene
- Lj3g3v0461030.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0461030.1 Non Chatacterized Hit- tr|I1HSU9|I1HSU9_BRADI
Uncharacterized protein (Fragment) OS=Brachypodium
dis,36.81,0.00000000000002,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; seg,NULL,NODE_42898_length_1365_cov_14.850550.path2.1
(315 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G08670.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 154 6e-38
AT3G51540.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 63 3e-10
AT2G40070.1 | Symbols: | BEST Arabidopsis thaliana protein matc... 61 9e-10
AT2G40070.2 | Symbols: | FUNCTIONS IN: molecular_function unkno... 60 1e-09
>AT3G08670.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G51540.1); Has 48380 Blast hits to 29827
proteins in 1356 species: Archae - 46; Bacteria - 5589;
Metazoa - 17361; Fungi - 13192; Plants - 2237; Viruses -
905; Other Eukaryotes - 9050 (source: NCBI BLink). |
chr3:2633946-2636536 FORWARD LENGTH=567
Length = 567
Score = 154 bits (390), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 102/251 (40%), Positives = 137/251 (54%), Gaps = 45/251 (17%)
Query: 104 PQLLVVPPDFPLETPPNLRTTLPNRPVSAGRSRPGANSATLKPNPDTQASVTSMSRRNG- 162
PQ +V DFPL+TPPNLRT+LP+RP+SAGRSRP S+ K +P+ + +T RRN
Sbjct: 319 PQQPIVLADFPLDTPPNLRTSLPDRPISAGRSRPVGGSSMAKASPEPKGPIT---RRNSS 375
Query: 163 -------------------------------RVPQGTEVVTRKSVQAPISVTDNN-GFGR 190
R+ +++ +R++V+ +VTDNN G GR
Sbjct: 376 PIVTRGRLTETQGKGRFGGNGQHLTDAPEPRRISNVSDITSRRTVKTSTTVTDNNNGLGR 435
Query: 191 AISKKSLDMAPRQMDTRNSSGTVRSLPSPTLFPQSIRTSTPKA--LRSLQTXXXXXXXXX 248
+ SK SLDMA R MD RN +L + TLFPQSIR ++ K +RS
Sbjct: 436 SFSKSSLDMAIRHMDIRNGKTNGCALSTTTLFPQSIRPASSKIQPIRSGNNHSDSISSNG 495
Query: 249 XXXDHE----RQHFAKLREVDVYQSSHHYDALLRKEDWSNTNWLHSGDEK-CDQGHIFDK 303
+E R+ KL ++D+Y+SS YDALL KED NTNWLHS D++ D G +FD
Sbjct: 496 TENGNEANEGRRLMGKLSDMDMYESS-RYDALLLKEDVKNTNWLHSIDDRSSDHGLMFDN 554
Query: 304 -GFESVLEPFA 313
GFE + EPFA
Sbjct: 555 GGFELLPEPFA 565
>AT3G51540.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G08670.1); Has 22744 Blast hits to 9965
proteins in 783 species: Archae - 64; Bacteria - 2760;
Metazoa - 8515; Fungi - 3864; Plants - 499; Viruses -
702; Other Eukaryotes - 6340 (source: NCBI BLink). |
chr3:19115342-19117210 FORWARD LENGTH=438
Length = 438
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 9/149 (6%)
Query: 170 VVTRKSVQAPISVTDNNGFGRAISKKSLDMAPRQMD-TRNSSGTVRSLPSPTLFPQSIRT 228
T KS++ +V D+ GR +S+ S+ MA +D RN + + SP L+P SIR+
Sbjct: 292 TTTPKSIKPSATVADSTRPGRKLSRASVQMAINHLDLARNGKVSTHTFSSPMLYPHSIRS 351
Query: 229 STPKALRSLQTXXXXXXXXXXXXDHERQHFAKLRE----VDVYQSSHHYDALLRKEDWSN 284
S+ L+ +HE + L + + S YDALL +D +
Sbjct: 352 SS----SGLRKPCGSSEGSCSSSNHEEEDGRSLTKEGNNTENKNDSARYDALLNVKDVKD 407
Query: 285 TNWLHSGDEKCDQGHIFDKGFESVLEPFA 313
TNWL + D++ Q IFD F+S + F+
Sbjct: 408 TNWLLNIDDESPQSLIFDNAFDSPPDLFS 436
>AT2G40070.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: proline-rich family protein (TAIR:AT3G09000.1); Has
35333 Blast hits to 34131 proteins in 2444 species:
Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi -
991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610
(source: NCBI BLink). | chr2:16728378-16731160 REVERSE
LENGTH=607
Length = 607
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 61/147 (41%), Gaps = 50/147 (34%)
Query: 111 PDFPLETPPNLRTTLPNRPVSAGRSRPGA-----NSATLKPNPDTQASVTSMSRRNGRVP 165
P F LETPPNLRTTLP RP+SA R RPGA S P + S S GR P
Sbjct: 377 PGFSLETPPNLRTTLPERPLSATRGRPGAPSSRSGSVEPGGPPGGRPRRQSCSPSRGRAP 436
Query: 166 --------------------------QGTEVVTR-------------------KSVQAPI 180
GT++V R ++ A
Sbjct: 437 MYSSGSSVPAVNRGYSKASDNVSPVMMGTKMVERVINMRKLAPPRSDDKGSPHGNLSAKS 496
Query: 181 SVTDNNGFGRAISKKSLDMAPRQMDTR 207
S D+ GFGR +SKKSLDMA R MD R
Sbjct: 497 SSPDSAGFGRTLSKKSLDMAIRHMDIR 523
>AT2G40070.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 17 plant
structures; EXPRESSED DURING: 7 growth stages; BEST
Arabidopsis thaliana protein match is: proline-rich
family protein (TAIR:AT3G09000.1); Has 108635 Blast hits
to 60786 proteins in 2176 species: Archae - 287;
Bacteria - 15142; Metazoa - 39415; Fungi - 26849; Plants
- 4416; Viruses - 2864; Other Eukaryotes - 19662
(source: NCBI BLink). | chr2:16728378-16731040 REVERSE
LENGTH=567
Length = 567
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 61/147 (41%), Gaps = 50/147 (34%)
Query: 111 PDFPLETPPNLRTTLPNRPVSAGRSRPGA-----NSATLKPNPDTQASVTSMSRRNGRVP 165
P F LETPPNLRTTLP RP+SA R RPGA S P + S S GR P
Sbjct: 337 PGFSLETPPNLRTTLPERPLSATRGRPGAPSSRSGSVEPGGPPGGRPRRQSCSPSRGRAP 396
Query: 166 --------------------------QGTEVVTR-------------------KSVQAPI 180
GT++V R ++ A
Sbjct: 397 MYSSGSSVPAVNRGYSKASDNVSPVMMGTKMVERVINMRKLAPPRSDDKGSPHGNLSAKS 456
Query: 181 SVTDNNGFGRAISKKSLDMAPRQMDTR 207
S D+ GFGR +SKKSLDMA R MD R
Sbjct: 457 SSPDSAGFGRTLSKKSLDMAIRHMDIR 483