Miyakogusa Predicted Gene

Lj3g3v0460930.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0460930.1 Non Chatacterized Hit- tr|E0W1S0|E0W1S0_PEDHC
Transcription initiation factor TFIID subunit,
putativ,52.17,2e-19,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,TAFII28-like protein; no description,Histone-fold;
Histon,NODE_22423_length_461_cov_104.694145.path2.1
         (109 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G20280.1 | Symbols: TAF11 | TBP-associated factor 11 | chr4:1...   177   1e-45
AT1G20000.1 | Symbols: TAF11b | TBP-associated factor 11B | chr1...   164   1e-41

>AT4G20280.1 | Symbols: TAF11 | TBP-associated factor 11 |
           chr4:10953792-10954664 FORWARD LENGTH=210
          Length = 210

 Score =  177 bits (449), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 83/109 (76%), Positives = 96/109 (88%)

Query: 1   MAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASITGTQKITIPITIVVSGIAKMF 60
           MAKMQ ILSQFTE+QMSRYESFRR+  Q+  MK+LL  +TG+QKI +P+ IV  GIAKMF
Sbjct: 102 MAKMQTILSQFTEDQMSRYESFRRSALQRPQMKKLLIGVTGSQKIGMPMIIVACGIAKMF 161

Query: 61  VGEVVETARIVIKERKESGPIRPCHLREAYRRLKLEGKVFKRSVPRLFR 109
           VGE+VETAR+V+ ERKESGPIRPCH+RE+YRRLKLEGKV KRSVPRLFR
Sbjct: 162 VGELVETARVVMAERKESGPIRPCHIRESYRRLKLEGKVPKRSVPRLFR 210


>AT1G20000.1 | Symbols: TAF11b | TBP-associated factor 11B |
           chr1:6936898-6937666 REVERSE LENGTH=204
          Length = 204

 Score =  164 bits (414), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 77/107 (71%), Positives = 95/107 (88%)

Query: 3   KMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASITGTQKITIPITIVVSGIAKMFVG 62
           KMQ ILSQFTEEQMSRYESFRR+GF+K++M++L+  ITG  K+   + IVV GIAKMFVG
Sbjct: 98  KMQKILSQFTEEQMSRYESFRRSGFKKSDMEKLVQRITGGPKMDDTMNIVVRGIAKMFVG 157

Query: 63  EVVETARIVIKERKESGPIRPCHLREAYRRLKLEGKVFKRSVPRLFR 109
           ++VETAR+V++ERKESGPIRPCH+RE+YRRLKL+GKV +RSV RLFR
Sbjct: 158 DLVETARVVMRERKESGPIRPCHIRESYRRLKLQGKVPQRSVQRLFR 204