Miyakogusa Predicted Gene
- Lj3g3v0449850.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0449850.1 tr|G7L1D4|G7L1D4_MEDTR Neurobeachin-like protein
OS=Medicago truncatula GN=MTR_7g075660 PE=4 SV=1,80.36,0,seg,NULL;
SUBFAMILY NOT NAMED,NULL; UNCHARACTERIZED,NULL,CUFF.40791.1
(912 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G45540.2 | Symbols: | WD-40 repeat family protein / beige-re... 1013 0.0
AT2G45540.1 | Symbols: | WD-40 repeat family protein / beige-re... 1013 0.0
AT3G60920.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Beige/BEAC... 679 0.0
>AT2G45540.2 | Symbols: | WD-40 repeat family protein / beige-related
| chr2:18757881-18772229 REVERSE LENGTH=3001
Length = 3001
Score = 1013 bits (2620), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 532/910 (58%), Positives = 627/910 (68%), Gaps = 26/910 (2%)
Query: 1 MTNMEEWPEWILEVLISNYEVGPNKLSESTSVGDIEDLVHNFLIIMLEHSMRQKDGWKDI 60
+T MEEWPEWILE+LISNYE K S S ++ED++HNFLIIMLEHSMRQKDGWKDI
Sbjct: 1281 LTTMEEWPEWILEILISNYEKDAGKQSASVGSCEVEDMIHNFLIIMLEHSMRQKDGWKDI 1340
Query: 61 EATIHCAEWLSIVGGSSTGEQRLRREESLPVFKRRLLGGLLDFAARELQVQTQIIXXXXX 120
EATIHCAEWLSIVGGSSTGEQR+RREESLP+FKRRL GGLLDFAARELQ QTQ+I
Sbjct: 1341 EATIHCAEWLSIVGGSSTGEQRIRREESLPIFKRRLFGGLLDFAARELQAQTQVIAAAAA 1400
Query: 121 XXXXEGLSPKDAKAEAENAAQLSVALVENAIVILMLVEDHLRLQSKHSSSRATDASPSPL 180
EGL+PKDAKA AENAAQLSV LVENAIVILMLVEDHLR QSK + + ASPSPL
Sbjct: 1401 GVAAEGLAPKDAKAGAENAAQLSVFLVENAIVILMLVEDHLRSQSKQTCATNAVASPSPL 1460
Query: 181 STVYPIKNRXXXXXXXXXXXXXXXXXXXXXXXXGGIPLDVLSSMADGSGQIPTSAVERIX 240
K R G +PLD+L+SMAD SGQI A+ER+
Sbjct: 1461 ------KKRTSTLTAIGESSEISSSRASLSSDSGKVPLDILASMADSSGQISAVAMERLT 1514
Query: 241 XXXXXEPYESVSCAFVSYGSCVKDLADGWKYRSRLWYGVGLPQNAVPXXXXXXXXXXXXX 300
EPYESVSCAFVSYGSC DLA+GWKYRSRLWYGVGLP
Sbjct: 1515 AASAAEPYESVSCAFVSYGSCAMDLAEGWKYRSRLWYGVGLPSKPSSLGGGGSGSDSWKS 1574
Query: 301 ALEKDASGNWVELPLVKKSVAMLQAXXXXXXXXXXXXXXXXXXXXXXXXMAALYQLLDSD 360
LEKDA GNW+ELPLVKKSV+MLQA M ALYQLLDSD
Sbjct: 1575 TLEKDAHGNWIELPLVKKSVSMLQALLLDESGLGGGLGIGGGSGTGMGGMTALYQLLDSD 1634
Query: 361 QPFLCMLRMVLLSMREDDDGEDHMLMRSTSFDDSVSEG-----------RKPRSALLWSV 409
QPFLCMLRMVLLSMRE+D GED+MLMR+ S + S R+ RSALLWSV
Sbjct: 1635 QPFLCMLRMVLLSMREEDYGEDNMLMRNLSSERSSGNSVTLDSGSQMSMRQSRSALLWSV 1694
Query: 410 LSPVLNMPISDSKRQRVLVASCVLYSEVYHAVSRDQKPLRKQYLEAILPPFVAVLRRWRP 469
LSP++NMPISDSKRQRVLV +CVLYSEV+HA+SRD++PLRKQY+EAI+PPF+AVLRRWRP
Sbjct: 1695 LSPIINMPISDSKRQRVLVTACVLYSEVWHAISRDRRPLRKQYIEAIVPPFIAVLRRWRP 1754
Query: 470 LLAGIHELATGDGLNPLIADDRALAADSLPIEAALXXXXXXXXXXXXXXXXXXXXXXXXX 529
LLAGIHELAT DG+NPL+ DDRALAAD+LP+E AL
Sbjct: 1755 LLAGIHELATADGMNPLVVDDRALAADALPVEGALSMVTPEWAAAFASPPAAMSLAMIAA 1814
Query: 530 XXXXXESQAPATSSPLRRDTSLLERKQTRLQTFSSFQRPLEVPNXXXXXXXXXXXXXXXX 589
E+ P T S LRRD+S+LERK +LQTFSSFQ+PLE PN
Sbjct: 1815 GAAGWEAPPPPTPSHLRRDSSMLERKTAKLQTFSSFQKPLEPPNNNAPPRPRDKAAAKAA 1874
Query: 590 XXXXRDLGG-FAKVGSGRGLSAVAMATSAQRRSASDMERVKRWNMSEAMGVAWMECLQQV 648
AK+GSGRGLSAVAMATSAQRR+ DMER++RWN SEAMGVAWMECLQ V
Sbjct: 1875 ALAAARDLERNAKIGSGRGLSAVAMATSAQRRNIGDMERLQRWNTSEAMGVAWMECLQPV 1934
Query: 649 DTKAVYGKDFNAFSYKYIAVLVASFALARNMQRSEIDRRAYVDVVDRHRISIGARAWRKL 708
DTK+VYGKDFNA SYK+IAVLVASFALARNMQRSEIDRR D++ +R+ +G+RAWRKL
Sbjct: 1935 DTKSVYGKDFNALSYKFIAVLVASFALARNMQRSEIDRRMQDDIIAANRLCLGSRAWRKL 1994
Query: 709 IHQLIEMRSLLGPFADNLYSPLRVFWKLDLMESSSRMRRCLRRNYQGSDHLGSAANYEDY 768
I L EMR GPF D + SP RVFWKLD MES SRMR+ +RRNY G+DH G+AA+Y+D
Sbjct: 1995 IRYLAEMRCFFGPFGDGICSPERVFWKLDSMESFSRMRQSIRRNYSGTDHHGAAADYDDQ 2054
Query: 769 FQEKNEPST-------PILSAEAISLEAVNVDEEPVETEDSVSRVDHIEYEGDNQPRLSE 821
+ K++ + P+++AE I +E ++E E D + + E ++ R+S
Sbjct: 2055 TETKSDNGSKGSQSNPPVVAAEVILMEIAYEEDEHGEG-DQLDVKGNAEEHKRDEGRISG 2113
Query: 822 AAEQTVQASQESSPTQLASDEHLVQSSSPIAPGYVPSELDERIVLELPSSMVRPLKVIRG 881
+ E + S +S + ++D +V+ SS +APG+VPSELDERI+LELP+SMVRPL+V++G
Sbjct: 2114 SHEHASRTSAGNSDPRTSNDLEMVRDSSVVAPGFVPSELDERILLELPTSMVRPLRVVKG 2173
Query: 882 TFQVTSRRIN 891
TFQ+T+RRIN
Sbjct: 2174 TFQITTRRIN 2183
>AT2G45540.1 | Symbols: | WD-40 repeat family protein / beige-related
| chr2:18757881-18772229 REVERSE LENGTH=2946
Length = 2946
Score = 1013 bits (2619), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 532/910 (58%), Positives = 627/910 (68%), Gaps = 26/910 (2%)
Query: 1 MTNMEEWPEWILEVLISNYEVGPNKLSESTSVGDIEDLVHNFLIIMLEHSMRQKDGWKDI 60
+T MEEWPEWILE+LISNYE K S S ++ED++HNFLIIMLEHSMRQKDGWKDI
Sbjct: 1226 LTTMEEWPEWILEILISNYEKDAGKQSASVGSCEVEDMIHNFLIIMLEHSMRQKDGWKDI 1285
Query: 61 EATIHCAEWLSIVGGSSTGEQRLRREESLPVFKRRLLGGLLDFAARELQVQTQIIXXXXX 120
EATIHCAEWLSIVGGSSTGEQR+RREESLP+FKRRL GGLLDFAARELQ QTQ+I
Sbjct: 1286 EATIHCAEWLSIVGGSSTGEQRIRREESLPIFKRRLFGGLLDFAARELQAQTQVIAAAAA 1345
Query: 121 XXXXEGLSPKDAKAEAENAAQLSVALVENAIVILMLVEDHLRLQSKHSSSRATDASPSPL 180
EGL+PKDAKA AENAAQLSV LVENAIVILMLVEDHLR QSK + + ASPSPL
Sbjct: 1346 GVAAEGLAPKDAKAGAENAAQLSVFLVENAIVILMLVEDHLRSQSKQTCATNAVASPSPL 1405
Query: 181 STVYPIKNRXXXXXXXXXXXXXXXXXXXXXXXXGGIPLDVLSSMADGSGQIPTSAVERIX 240
K R G +PLD+L+SMAD SGQI A+ER+
Sbjct: 1406 ------KKRTSTLTAIGESSEISSSRASLSSDSGKVPLDILASMADSSGQISAVAMERLT 1459
Query: 241 XXXXXEPYESVSCAFVSYGSCVKDLADGWKYRSRLWYGVGLPQNAVPXXXXXXXXXXXXX 300
EPYESVSCAFVSYGSC DLA+GWKYRSRLWYGVGLP
Sbjct: 1460 AASAAEPYESVSCAFVSYGSCAMDLAEGWKYRSRLWYGVGLPSKPSSLGGGGSGSDSWKS 1519
Query: 301 ALEKDASGNWVELPLVKKSVAMLQAXXXXXXXXXXXXXXXXXXXXXXXXMAALYQLLDSD 360
LEKDA GNW+ELPLVKKSV+MLQA M ALYQLLDSD
Sbjct: 1520 TLEKDAHGNWIELPLVKKSVSMLQALLLDESGLGGGLGIGGGSGTGMGGMTALYQLLDSD 1579
Query: 361 QPFLCMLRMVLLSMREDDDGEDHMLMRSTSFDDSVSEG-----------RKPRSALLWSV 409
QPFLCMLRMVLLSMRE+D GED+MLMR+ S + S R+ RSALLWSV
Sbjct: 1580 QPFLCMLRMVLLSMREEDYGEDNMLMRNLSSERSSGNSVTLDSGSQMSMRQSRSALLWSV 1639
Query: 410 LSPVLNMPISDSKRQRVLVASCVLYSEVYHAVSRDQKPLRKQYLEAILPPFVAVLRRWRP 469
LSP++NMPISDSKRQRVLV +CVLYSEV+HA+SRD++PLRKQY+EAI+PPF+AVLRRWRP
Sbjct: 1640 LSPIINMPISDSKRQRVLVTACVLYSEVWHAISRDRRPLRKQYIEAIVPPFIAVLRRWRP 1699
Query: 470 LLAGIHELATGDGLNPLIADDRALAADSLPIEAALXXXXXXXXXXXXXXXXXXXXXXXXX 529
LLAGIHELAT DG+NPL+ DDRALAAD+LP+E AL
Sbjct: 1700 LLAGIHELATADGMNPLVVDDRALAADALPVEGALSMVTPEWAAAFASPPAAMSLAMIAA 1759
Query: 530 XXXXXESQAPATSSPLRRDTSLLERKQTRLQTFSSFQRPLEVPNXXXXXXXXXXXXXXXX 589
E+ P T S LRRD+S+LERK +LQTFSSFQ+PLE PN
Sbjct: 1760 GAAGWEAPPPPTPSHLRRDSSMLERKTAKLQTFSSFQKPLEPPNNNAPPRPRDKAAAKAA 1819
Query: 590 XXXXRDLGG-FAKVGSGRGLSAVAMATSAQRRSASDMERVKRWNMSEAMGVAWMECLQQV 648
AK+GSGRGLSAVAMATSAQRR+ DMER++RWN SEAMGVAWMECLQ V
Sbjct: 1820 ALAAARDLERNAKIGSGRGLSAVAMATSAQRRNIGDMERLQRWNTSEAMGVAWMECLQPV 1879
Query: 649 DTKAVYGKDFNAFSYKYIAVLVASFALARNMQRSEIDRRAYVDVVDRHRISIGARAWRKL 708
DTK+VYGKDFNA SYK+IAVLVASFALARNMQRSEIDRR D++ +R+ +G+RAWRKL
Sbjct: 1880 DTKSVYGKDFNALSYKFIAVLVASFALARNMQRSEIDRRMQDDIIAANRLCLGSRAWRKL 1939
Query: 709 IHQLIEMRSLLGPFADNLYSPLRVFWKLDLMESSSRMRRCLRRNYQGSDHLGSAANYEDY 768
I L EMR GPF D + SP RVFWKLD MES SRMR+ +RRNY G+DH G+AA+Y+D
Sbjct: 1940 IRYLAEMRCFFGPFGDGICSPERVFWKLDSMESFSRMRQSIRRNYSGTDHHGAAADYDDQ 1999
Query: 769 FQEKNEPST-------PILSAEAISLEAVNVDEEPVETEDSVSRVDHIEYEGDNQPRLSE 821
+ K++ + P+++AE I +E ++E E D + + E ++ R+S
Sbjct: 2000 TETKSDNGSKGSQSNPPVVAAEVILMEIAYEEDEHGEG-DQLDVKGNAEEHKRDEGRISG 2058
Query: 822 AAEQTVQASQESSPTQLASDEHLVQSSSPIAPGYVPSELDERIVLELPSSMVRPLKVIRG 881
+ E + S +S + ++D +V+ SS +APG+VPSELDERI+LELP+SMVRPL+V++G
Sbjct: 2059 SHEHASRTSAGNSDPRTSNDLEMVRDSSVVAPGFVPSELDERILLELPTSMVRPLRVVKG 2118
Query: 882 TFQVTSRRIN 891
TFQ+T+RRIN
Sbjct: 2119 TFQITTRRIN 2128
>AT3G60920.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Beige/BEACH
(InterPro:IPR000409); BEST Arabidopsis thaliana protein
match is: WD-40 repeat family protein / beige-related
(TAIR:AT2G45540.1); Has 1795 Blast hits to 1563 proteins
in 214 species: Archae - 2; Bacteria - 29; Metazoa - 830;
Fungi - 160; Plants - 230; Viruses - 0; Other Eukaryotes
- 544 (source: NCBI BLink). | chr3:22503328-22513031
REVERSE LENGTH=1941
Length = 1941
Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/596 (60%), Positives = 406/596 (68%), Gaps = 23/596 (3%)
Query: 1 MTNMEEWPEWILEVLISNYEVGPNKLSESTSVGDIEDLVHNFLIIMLEHSMRQKDGWKDI 60
+T MEEWPEWILE+LISNYE K S S + EDL+HNFLIIMLEHSMRQKDGWKDI
Sbjct: 795 LTKMEEWPEWILEILISNYEKDAGKQSASPGSAEEEDLIHNFLIIMLEHSMRQKDGWKDI 854
Query: 61 EATIHCAEWLSIVGGSSTGEQRLRREESLPVFKRRLLGGLLDFAARELQVQTQIIXXXXX 120
EATIHCAEWL+ VGGSSTGE+R+RREESLP+FKRRLLGGLLDFAA ELQ QTQ+I
Sbjct: 855 EATIHCAEWLTFVGGSSTGEKRIRREESLPIFKRRLLGGLLDFAASELQAQTQVIAAASA 914
Query: 121 XXXXEGLSPKDAKAEAENAAQLSVALVENAIVILMLVEDHLRLQSKHS-SSRATDASPSP 179
E L+PKDAKA ENAA LSV LVEN +VILMLVEDHLRLQSK + ++ A D SPSP
Sbjct: 915 GFAAESLTPKDAKAGVENAALLSVFLVENTVVILMLVEDHLRLQSKQNCAASAVDVSPSP 974
Query: 180 LSTVYPIKNRXXXXXXXXXXXXXXXXXXXXXXXXGGIPLDVLSSMADGSGQIPTSAVERI 239
LS VYP R GG+ LD+L+SMAD SGQI T+ +ER+
Sbjct: 975 LSLVYPPNYRSHTLPTVGESSEVSSSCASVSSDSGGVHLDILASMADASGQISTAVMERL 1034
Query: 240 XXXXXXEPYESVSCAFVSYGSCVKDLADGWKYRSRLWYGVGLPQNAVPXXXXXXXXXXXX 299
EPYESVSCAFVSYGSC +DLAD WKYRSRLWYGVGLP
Sbjct: 1035 AAAAAAEPYESVSCAFVSYGSCTRDLADAWKYRSRLWYGVGLPSKTSCFGGGGSGWDSWK 1094
Query: 300 XALEKDASGNWVELPLVKKSVAMLQAXXXXXXXXXXXXXXXXXXXXXXXXMAALYQLLDS 359
AL+KDA GNW+ELPLVKKSV+MLQA M+ LYQLLDS
Sbjct: 1095 HALQKDAQGNWIELPLVKKSVSMLQALLLDESGLGGGLGIGGGSGTGMGGMSGLYQLLDS 1154
Query: 360 DQPFLCMLRMVLLSMREDDDGEDHMLMRSTSFDDSVSEG-------------------RK 400
DQPFLCMLRMVLLS+RE+D GED +LM++ S +D ++ G R+
Sbjct: 1155 DQPFLCMLRMVLLSLREEDHGEDSLLMKNLSSEDGITGGLQCPLGNSASVDISSQLSMRQ 1214
Query: 401 PRSALLWSVLSPVLNMPISDSKRQRVLVASCVLYSEVYHAVSRDQKPLRKQYLEAILPPF 460
SALLWSVLSPVLNMPISDSKRQRVLV +CVLYSEV++AVS+D++PLRKQYLEAILPPF
Sbjct: 1215 SPSALLWSVLSPVLNMPISDSKRQRVLVTTCVLYSEVWNAVSKDKRPLRKQYLEAILPPF 1274
Query: 461 VAVLRRWRPLLAGIHELATGDGLNPLIADDRALAADSLPIEAALXXXXXXXXXXXXXXXX 520
VA+LRRWRPLLAGIHEL+TGDG+NPL+ D RALAAD+LPIEAAL
Sbjct: 1275 VAILRRWRPLLAGIHELSTGDGVNPLVVDTRALAADALPIEAALSMISPEWAAAFASPPS 1334
Query: 521 XXXXXXXXXXXXXXE---SQAPATSSPLRRDTSLLERKQTRLQTFSSFQRPLEVPN 573
E AP PLRRD+SLLERK T+LQTFSSFQ+PLE PN
Sbjct: 1335 AMALAMIAAGAAGWEAPAHPAPPAPPPLRRDSSLLERKSTKLQTFSSFQKPLEAPN 1390
Score = 132 bits (333), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 73/160 (45%), Positives = 104/160 (65%), Gaps = 3/160 (1%)
Query: 732 VFWKLDLMESSSRMRRCLRRNYQGSDHLGSAANYEDYFQEKNEPSTPILSAEAISLEAVN 791
VFWKLD MESSSRMR+CLRRNY G+ HL + NY D N +P+L+ EAIS E +
Sbjct: 1420 VFWKLDSMESSSRMRQCLRRNYSGTGHLETTRNYGDQTYLMNNHDSPVLAVEAISKEIMY 1479
Query: 792 VDEEPVETEDSVSRVDHIEYEGDNQPRLSEAAEQTVQASQESSPTQLASDEHLVQSSSPI 851
D+E + +D + E +G+N+ R S + E + S + + S++++VQ+S+ +
Sbjct: 1480 EDDEHGDADDLEIEGNVGERKGENEERRSGSLEDAITLSTGINDHRPLSEQNMVQNSTEV 1539
Query: 852 APGYVPSELDERIVLELPSSMVRPLKVIRGTFQVTSRRIN 891
SEL ERIVLE+ S+MVRPL V++GTFQ+T+RRIN
Sbjct: 1540 KD---LSELKERIVLEISSTMVRPLGVVKGTFQITTRRIN 1576