Miyakogusa Predicted Gene

Lj3g3v0429680.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0429680.1 Non Chatacterized Hit- tr|K3XQS7|K3XQS7_SETIT
Uncharacterized protein (Fragment) OS=Setaria italica
,46.35,2e-18,VQ,VQ; seg,NULL,CUFF.40772.1
         (232 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G28280.2 | Symbols:  | VQ motif-containing protein | chr1:988...   150   6e-37
AT1G28280.1 | Symbols:  | VQ motif-containing protein | chr1:988...   150   9e-37
AT3G15300.1 | Symbols:  | VQ motif-containing protein | chr3:514...   144   7e-35
AT5G53830.1 | Symbols:  | VQ motif-containing protein | chr5:218...   130   9e-31
AT2G33780.1 | Symbols:  | VQ motif-containing protein | chr2:142...    89   2e-18

>AT1G28280.2 | Symbols:  | VQ motif-containing protein |
           chr1:9886297-9887395 REVERSE LENGTH=243
          Length = 243

 Score =  150 bits (380), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 98/198 (49%), Positives = 118/198 (59%), Gaps = 20/198 (10%)

Query: 45  RSDS-NPYPTTYVQADTSSFKQVVQMLTGSSD------TTKPAPCSKLHLQDPVPSSRNF 97
           RS+S NPYPTT+VQADTSSFKQVVQMLTGS++      + KP P    H  DP  +  +F
Sbjct: 48  RSESGNPYPTTFVQADTSSFKQVVQMLTGSAERPKHGSSLKPNPTH--HQPDPRSTPSSF 105

Query: 98  NIPPMKTAPKKQQQQ----GFKLYERRNYNNSLKNTLIINTFMKPNSAEICRFXXXXXXX 153
           +IPP+K  P K+Q      GF+LYERRN   +LK   +   F   NSA    F       
Sbjct: 106 SIPPIKAVPNKKQSSSSASGFRLYERRNSMKNLKINPLNPVFNPVNSA----FSPRKPEI 161

Query: 154 XXXXXXDFPSLALSPVTPLNDDPFDKXXXXXXX---XXXXXKAIADKGFYLHPSPMSTPR 210
                 DFPSL LSPVTPL  DPFD+               KA+ ++GFYLHPSP +TP 
Sbjct: 162 LSPSILDFPSLVLSPVTPLIPDPFDRSGSSNQSPNELAAEEKAMKERGFYLHPSPATTPM 221

Query: 211 GFEPQLLPLFPVTSPRVT 228
             EP+LLPLFPVTSPRV+
Sbjct: 222 DPEPRLLPLFPVTSPRVS 239


>AT1G28280.1 | Symbols:  | VQ motif-containing protein |
           chr1:9886652-9887395 REVERSE LENGTH=247
          Length = 247

 Score =  150 bits (378), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 98/197 (49%), Positives = 117/197 (59%), Gaps = 20/197 (10%)

Query: 45  RSDS-NPYPTTYVQADTSSFKQVVQMLTGSSD------TTKPAPCSKLHLQDPVPSSRNF 97
           RS+S NPYPTT+VQADTSSFKQVVQMLTGS++      + KP P    H  DP  +  +F
Sbjct: 48  RSESGNPYPTTFVQADTSSFKQVVQMLTGSAERPKHGSSLKPNPTH--HQPDPRSTPSSF 105

Query: 98  NIPPMKTAPKKQQQQ----GFKLYERRNYNNSLKNTLIINTFMKPNSAEICRFXXXXXXX 153
           +IPP+K  P K+Q      GF+LYERRN   +LK   +   F   NSA    F       
Sbjct: 106 SIPPIKAVPNKKQSSSSASGFRLYERRNSMKNLKINPLNPVFNPVNSA----FSPRKPEI 161

Query: 154 XXXXXXDFPSLALSPVTPLNDDPFDKXXXXXXX---XXXXXKAIADKGFYLHPSPMSTPR 210
                 DFPSL LSPVTPL  DPFD+               KA+ ++GFYLHPSP +TP 
Sbjct: 162 LSPSILDFPSLVLSPVTPLIPDPFDRSGSSNQSPNELAAEEKAMKERGFYLHPSPATTPM 221

Query: 211 GFEPQLLPLFPVTSPRV 227
             EP+LLPLFPVTSPRV
Sbjct: 222 DPEPRLLPLFPVTSPRV 238


>AT3G15300.1 | Symbols:  | VQ motif-containing protein |
           chr3:5147551-5148210 REVERSE LENGTH=219
          Length = 219

 Score =  144 bits (362), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 103/198 (52%), Positives = 116/198 (58%), Gaps = 26/198 (13%)

Query: 45  RSDSNPYPTTYVQADTSSFKQVVQMLTGSSDTTKPAPCSKLHLQDPVPSSR-NFNIPPMK 103
           RSD   YPTT+VQAD+SSFKQVVQMLTGSS                 PS + NF IPP+K
Sbjct: 31  RSDH--YPTTFVQADSSSFKQVVQMLTGSSSPRS----PDSPRPPTTPSGKGNFVIPPIK 84

Query: 104 TA-PKKQQQQGFKLYERR---NYNNSLKNTLIINTFM-KPNSAEICRFXXXXXXXXXXXX 158
           TA PKK    G KLYERR    +NN+LKN+L+INT M     A   RF            
Sbjct: 85  TAQPKKHS--GNKLYERRSHGGFNNNLKNSLMINTLMIGGGGAGSPRFSPRNQEILSPSC 142

Query: 159 XDFPSLAL-SPVTPL-------NDDPFDKXXXXXXXXXXXXKAIADKGFYLHPSPMSTPR 210
            DFP LAL SPVTPL         DPFDK            + IADKG+YLH SP+STPR
Sbjct: 143 LDFPKLALNSPVTPLKQGTNGNEGDPFDKMSPLSEEE----RGIADKGYYLHRSPISTPR 198

Query: 211 GFEPQLLPLFPVTSPRVT 228
             EPQLLPLFPVTSPR++
Sbjct: 199 DSEPQLLPLFPVTSPRLS 216


>AT5G53830.1 | Symbols:  | VQ motif-containing protein |
           chr5:21857057-21857788 FORWARD LENGTH=243
          Length = 243

 Score =  130 bits (326), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 99/206 (48%), Positives = 114/206 (55%), Gaps = 38/206 (18%)

Query: 48  SNPYPTTYVQADTSSFKQVVQMLTGSSDTTKPAPCSKLHLQDPVPSSRN-----FNIPPM 102
           SNPYPTT+VQADTS+FKQVVQMLTGSS  T     +  H + P P + N     F+IPP+
Sbjct: 44  SNPYPTTFVQADTSTFKQVVQMLTGSSTDT----TTGKHHEAPSPVNNNNKGSSFSIPPI 99

Query: 103 KTAPKKQQQQGFKLYERRNYNNSL--KNTLIINTFMKPNSAEIC------------RFXX 148
           K      +   FKLYERR  NN++  KN L+INT    NS  +             RF  
Sbjct: 100 K------KTNSFKLYERRQNNNNMFAKNDLMINTLRLQNSQRLMFTGGNSSHHQSPRFSP 153

Query: 149 XXXXXXXX-----XXXDFPSLAL-SPVTPL--NDDPFDKXX-XXXXXXXXXXKAIADKGF 199
                           DFP L L SPVTPL  NDDPF+K             KAIADKGF
Sbjct: 154 RNSSSSENILLSPSMLDFPKLGLNSPVTPLRSNDDPFNKSSPLSLGNSSEEDKAIADKGF 213

Query: 200 YLHPSPMSTPRGFEPQLLPLFPVTSP 225
           YLHPSP+STPR  +P LLPLFPV SP
Sbjct: 214 YLHPSPVSTPRDSQPLLLPLFPVASP 239


>AT2G33780.1 | Symbols:  | VQ motif-containing protein |
           chr2:14291117-14291731 REVERSE LENGTH=204
          Length = 204

 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/186 (39%), Positives = 93/186 (50%), Gaps = 40/186 (21%)

Query: 51  YPTTYVQADTSSFKQVVQMLTGSSDTTKPAPCSKLHLQDPVPSSRNF----NIPPMKTAP 106
           Y TT+++ D SSFKQVVQ+LTG        P +  H  DP      F    +IPP+K   
Sbjct: 34  YETTFIRTDPSSFKQVVQLLTG-------IPKNPTHQPDP-----RFPPFHSIPPIKAVT 81

Query: 107 KKQQQQGFKLYERRNYNNSLKNTLIIN-TFMKPNSAEICRFXXXXXXXXXXXXXDFPSLA 165
            K+Q   F+L ERRN   S+K+ L IN T   P   EI                +FP+L 
Sbjct: 82  NKKQSSSFRLSERRN---SMKHYLNINPTHSGP--PEIL----------TPTILNFPALD 126

Query: 166 LSPVTPLNDDPFDKXXXXXXXXXXX--------XKAIADKGFYLHPSPMSTPRGFEPQLL 217
           LSP TPL  DPF +                    ++I +KGFYL PSP +TPR  EP+LL
Sbjct: 127 LSPDTPLMSDPFYRPGSFSQSPSDSKPSFDDDQERSIKEKGFYLRPSPSTTPRDTEPRLL 186

Query: 218 PLFPVT 223
            LFP+T
Sbjct: 187 SLFPMT 192