Miyakogusa Predicted Gene

Lj3g3v0429140.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0429140.1 tr|D8U6K0|D8U6K0_VOLCA Plastid/chloroplast
ribosomal protein S20 OS=Volvox carteri GN=prpS20 PE=3
SV,47.2,2e-19,no description,Ribosomal protein S20;
Ribosomal_S20p,Ribosomal protein S20; Ribosomal_S20,Ribosomal
,CUFF.40751.1
         (177 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G15190.1 | Symbols:  | chloroplast 30S ribosomal protein S20,...   175   2e-44

>AT3G15190.1 | Symbols:  | chloroplast 30S ribosomal protein S20,
           putative | chr3:5116216-5117412 FORWARD LENGTH=202
          Length = 202

 Score =  175 bits (443), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 88/128 (68%), Positives = 103/128 (80%), Gaps = 2/128 (1%)

Query: 45  FSQGSLSLSPVQRRTLVVCEVVT-KKKVDSAIKRARQAEKRRIYNKARKSEIKTRMKKVL 103
           FS G+L +    R+ L+VCE     KK DSA KRARQAEKRR+YNK++KSE +TRMKKVL
Sbjct: 61  FSTGNLWVQKPMRQ-LIVCEAAAPTKKADSAAKRARQAEKRRVYNKSKKSEARTRMKKVL 119

Query: 104 EALESLKKKSDAQPEEILPIEKLIGEAYSVIDKAIRVGTLHRNTGGHRKSRLARRKKVVE 163
           EALE LKKK+DAQ +EI+ +EKLIGEAYS IDKA++V  LH+NTG  RKSRLARRKK VE
Sbjct: 120 EALEGLKKKTDAQADEIVTVEKLIGEAYSAIDKAVKVKALHKNTGARRKSRLARRKKAVE 179

Query: 164 IHHGWYTP 171
           IHHGWY P
Sbjct: 180 IHHGWYVP 187