Miyakogusa Predicted Gene

Lj3g3v0428960.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0428960.2 Non Chatacterized Hit- tr|I1KDP8|I1KDP8_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.41899
PE,75.78,0,seg,NULL; no description,NULL; RNase_T,Exonuclease, RNase
T/DNA polymerase III; Ribonuclease H-like,,CUFF.40732.2
         (323 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G15140.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...   387   e-108

>AT3G15140.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr3:5099712-5101717
           REVERSE LENGTH=337
          Length = 337

 Score =  387 bits (995), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 178/259 (68%), Positives = 215/259 (83%), Gaps = 3/259 (1%)

Query: 68  WKPMCLYHTQGKCTMMDDLIHLEKFNHDCSRELQVNSAELNKICPQNLDFFLVLDLEGKV 127
           W+PMCLY+T GKCT MDD  HLE FNHDCS+EL+V +A+L +   Q  +FFLV+DLEGKV
Sbjct: 79  WRPMCLYYTHGKCTKMDDPAHLEIFNHDCSKELRVAAADLERKKSQEFNFFLVIDLEGKV 138

Query: 128 EILEFPVLKICAKTLQVEDIFHRFVRPTVMSEQRINEYIEGKYGKFGVDRVWHDTAIPFK 187
           EILEFP+L + AKT++V D+FHRFVRPT MSEQ IN+YIEGKYG+ GVDRVWHDTAIPFK
Sbjct: 139 EILEFPILIVDAKTMEVVDLFHRFVRPTKMSEQAINKYIEGKYGELGVDRVWHDTAIPFK 198

Query: 188 EVIQEFEAWLMQHQLW---MGGKLNRAAFVTCGNWDLKTKVPQQCEVSKIKLPPYFVEWI 244
           +V++EFE WL +H LW       LN AAFVTCGNWD+KTK+P+QC VS I LPPYF+EWI
Sbjct: 199 QVVEEFEVWLAEHDLWDKDTDWGLNDAAFVTCGNWDIKTKIPEQCVVSNINLPPYFMEWI 258

Query: 245 NLKDVYLNFYNRRATGMVTMVKELQIPLMGSHHLGIDDTKNIARVLQRMLIDGALIQITA 304
           NLKDVYLNFY R A GMV+M+++  I LMGSHHLGIDDTKNI RV+QRML +GA++++TA
Sbjct: 259 NLKDVYLNFYGREARGMVSMMRQCGIKLMGSHHLGIDDTKNITRVVQRMLSEGAVLKLTA 318

Query: 305 RRNPSSPGNVNFLFKNRIR 323
           RR+ S+  NV FLFKNRI+
Sbjct: 319 RRSKSNMRNVEFLFKNRIK 337