Miyakogusa Predicted Gene
- Lj3g3v0428880.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0428880.1 Non Chatacterized Hit- tr|A5BT31|A5BT31_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,64.62,2e-17,HOMEOBOX_2,Homeodomain; Homeodomain,Homeodomain; no
description,Homeodomain-like; coiled-coil,NULL; ,CUFF.40745.1
(374 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G18380.1 | Symbols: | sequence-specific DNA binding transcri... 384 e-107
AT3G18380.3 | Symbols: | sequence-specific DNA binding transcri... 383 e-107
AT3G18380.2 | Symbols: | sequence-specific DNA binding transcri... 380 e-105
AT1G15215.2 | Symbols: | BEST Arabidopsis thaliana protein matc... 181 8e-46
AT1G15215.3 | Symbols: | BEST Arabidopsis thaliana protein matc... 163 2e-40
AT1G15215.1 | Symbols: | BEST Arabidopsis thaliana protein matc... 155 3e-38
>AT3G18380.1 | Symbols: | sequence-specific DNA binding
transcription factors;sequence-specific DNA binding |
chr3:6311002-6313181 REVERSE LENGTH=348
Length = 348
Score = 384 bits (987), Expect = e-107, Method: Compositional matrix adjust.
Identities = 197/341 (57%), Positives = 246/341 (72%), Gaps = 18/341 (5%)
Query: 1 MGRPPSNGGPAFRFTQNEVAEMEAILQEHNNAMPARDVLAVLAEKFSESPDRKGKITVQM 60
MGRPPSNGGPAFRF EV EMEAIL +HN AMP R +L LA+KFSESP+RKGK+ VQ
Sbjct: 1 MGRPPSNGGPAFRFILPEVTEMEAILLQHNTAMPGRHILEALADKFSESPERKGKVVVQF 60
Query: 61 KQVWNWFQNKRYAIRAKSSKTPGKLNITPMPRDD-SAPVRNMSQPIAAPI---LTG--PG 114
KQ+WNWFQN+RYA+RA+ +K PGKLN++ MPR D +R++ QP++ P +TG PG
Sbjct: 61 KQIWNWFQNRRYALRARGNKAPGKLNVSSMPRMDLPNQMRSVIQPLSVPKTTHMTGNLPG 120
Query: 115 S--------VPTTAKVTPENSVMEFEAKSARDGAWYDVASFLSHRYLESSDPEVLVRFAG 166
VP + +NS +EFEAKSARDGAWYDV +FL+HR LE DPEV VRFAG
Sbjct: 121 MTPAPSGSLVPGVMRSGSDNSYLEFEAKSARDGAWYDVQAFLAHRNLEIGDPEVQVRFAG 180
Query: 167 FGPEEDEWVNVRRNVRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAHVLDSQXXX 226
F EEDEW+NV+++VR RSLPCE+SECVAVL GDL+LCFQEGK+QALYFDA VLD+Q
Sbjct: 181 FEVEEDEWINVKKHVRQRSLPCEASECVAVLAGDLVLCFQEGKDQALYFDAIVLDAQRRR 240
Query: 227 XXXXXXXXXFLVRYDHDQSEEIVPLRKVCRRPETDYRLQQLH-AVSDSAHVDQ-QKSGMD 284
FLVRY HDQSEEIVPLRK+CRRPETDYRLQQLH AV+D A+ +Q Q +D
Sbjct: 241 HDVRGCRCRFLVRYSHDQSEEIVPLRKICRRPETDYRLQQLHNAVNDLANSNQHQIPALD 300
Query: 285 AANVYTIRVTSSSETV--PKQQVTNIHQLPTPVLQPNVSLA 323
AA + + ++ + P+ + ++ P ++QP+ + A
Sbjct: 301 AAAKTPLSLPGATVPIVAPESKDPSLSATPATLVQPSSNAA 341
>AT3G18380.3 | Symbols: | sequence-specific DNA binding
transcription factors;sequence-specific DNA binding |
chr3:6311002-6313181 REVERSE LENGTH=346
Length = 346
Score = 383 bits (984), Expect = e-107, Method: Compositional matrix adjust.
Identities = 198/339 (58%), Positives = 247/339 (72%), Gaps = 16/339 (4%)
Query: 1 MGRPPSNGGPAFRFTQNEVAEMEAILQEHNNAMPARDVLAVLAEKFSESPDRKGKITVQM 60
MGRPPSNGGPAFRF EV EMEAIL +HN AMP R +L LA+KFSESP+RKGK+ VQ
Sbjct: 1 MGRPPSNGGPAFRFILPEVTEMEAILLQHNTAMPGRHILEALADKFSESPERKGKVVVQF 60
Query: 61 KQVWNWFQNKRYAIRAKSSKTPGKLNITPMPRDD-SAPVRNMSQPIAAPI---LTG--PG 114
KQ+WNWFQN+RYA+RA+ +K PGKLN++ MPR D +R++ QP++ P +TG PG
Sbjct: 61 KQIWNWFQNRRYALRARGNKAPGKLNVSSMPRMDLPNQMRSVIQPLSVPKTTHMTGNLPG 120
Query: 115 -----SVPTTAKVTPENSVMEFEAKSARDGAWYDVASFLSHRYLESSDPEVLVRFAGFGP 169
SVP + +NS +EFEAKSARDGAWYDV +FL+HR LE DPEV VRFAGF
Sbjct: 121 MTPAPSVPGVMRSGSDNSYLEFEAKSARDGAWYDVQAFLAHRNLEIGDPEVQVRFAGFEV 180
Query: 170 EEDEWVNVRRNVRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAHVLDSQXXXXXX 229
EEDEW+NV+++VR RSLPCE+SECVAVL GDL+LCFQEGK+QALYFDA VLD+Q
Sbjct: 181 EEDEWINVKKHVRQRSLPCEASECVAVLAGDLVLCFQEGKDQALYFDAIVLDAQRRRHDV 240
Query: 230 XXXXXXFLVRYDHDQSE-EIVPLRKVCRRPETDYRLQQLH-AVSDSAHVDQ-QKSGMDAA 286
FLVRY HDQSE EIVPLRK+CRRPETDYRLQQLH AV+D A+ +Q Q +DAA
Sbjct: 241 RGCRCRFLVRYSHDQSEQEIVPLRKICRRPETDYRLQQLHNAVNDLANSNQHQIPALDAA 300
Query: 287 NVYTIRVTSSSETV--PKQQVTNIHQLPTPVLQPNVSLA 323
+ + ++ + P+ + ++ P ++QP+ + A
Sbjct: 301 AKTPLSLPGATVPIVAPESKDPSLSATPATLVQPSSNAA 339
>AT3G18380.2 | Symbols: | sequence-specific DNA binding
transcription factors;sequence-specific DNA binding |
chr3:6311002-6313181 REVERSE LENGTH=349
Length = 349
Score = 380 bits (975), Expect = e-105, Method: Compositional matrix adjust.
Identities = 197/342 (57%), Positives = 246/342 (71%), Gaps = 19/342 (5%)
Query: 1 MGRPPSNGGPAFRFTQNEVAEMEAILQEHNNAMPARDVLAVLAEKFSESPDRKGKITVQM 60
MGRPPSNGGPAFRF EV EMEAIL +HN AMP R +L LA+KFSESP+RKGK+ VQ
Sbjct: 1 MGRPPSNGGPAFRFILPEVTEMEAILLQHNTAMPGRHILEALADKFSESPERKGKVVVQF 60
Query: 61 KQVWNWFQNKRYAIRAKSSKTPGKLNITPMPRDD-SAPVRNMSQPIAAPI---LTG--PG 114
KQ+WNWFQN+RYA+RA+ +K PGKLN++ MPR D +R++ QP++ P +TG PG
Sbjct: 61 KQIWNWFQNRRYALRARGNKAPGKLNVSSMPRMDLPNQMRSVIQPLSVPKTTHMTGNLPG 120
Query: 115 S--------VPTTAKVTPENSVMEFEAKSARDGAWYDVASFLSHRYLESSDPEVLVRFAG 166
VP + +NS +EFEAKSARDGAWYDV +FL+HR LE DPEV VRFAG
Sbjct: 121 MTPAPSGSLVPGVMRSGSDNSYLEFEAKSARDGAWYDVQAFLAHRNLEIGDPEVQVRFAG 180
Query: 167 FGPEEDEWVNVRRNVRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAHVLDSQXXX 226
F EEDEW+NV+++VR RSLPCE+SECVAVL GDL+LCFQEGK+QALYFDA VLD+Q
Sbjct: 181 FEVEEDEWINVKKHVRQRSLPCEASECVAVLAGDLVLCFQEGKDQALYFDAIVLDAQRRR 240
Query: 227 XXXXXXXXXFLVRYDHDQSE-EIVPLRKVCRRPETDYRLQQLH-AVSDSAHVDQ-QKSGM 283
FLVRY HDQSE EIVPLRK+CRRPETDYRLQQLH AV+D A+ +Q Q +
Sbjct: 241 HDVRGCRCRFLVRYSHDQSEQEIVPLRKICRRPETDYRLQQLHNAVNDLANSNQHQIPAL 300
Query: 284 DAANVYTIRVTSSSETV--PKQQVTNIHQLPTPVLQPNVSLA 323
DAA + + ++ + P+ + ++ P ++QP+ + A
Sbjct: 301 DAAAKTPLSLPGATVPIVAPESKDPSLSATPATLVQPSSNAA 342
>AT1G15215.2 | Symbols: | BEST Arabidopsis thaliana protein match
is: sequence-specific DNA binding transcription
factors;sequence-specific DNA binding
(TAIR:AT3G18380.1); Has 89 Blast hits to 86 proteins in
16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink). | chr1:5238096-5239770 FORWARD
LENGTH=258
Length = 258
Score = 181 bits (459), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 102/247 (41%), Positives = 140/247 (56%), Gaps = 4/247 (1%)
Query: 14 FTQNEVAEMEAILQEHNNAMPARDVLAVLAEKFSESPDRKGKITVQMKQVWNWFQNKRYA 73
FT +E+ +ME + +E + +D +A FS S +R GK ++ KQV WFQ K
Sbjct: 14 FTLSEIVDMENLYKELGDQSLHKDFCQTVASTFSCSVNRNGKSSITWKQVQIWFQEK--- 70
Query: 74 IRAKSSKTPGKLNITPMP-RDDSAPVRNMSQPIAAPILTGPGSVPTTAKVTPENSVMEFE 132
++ +S L P+ D S P S A + V T + + + FE
Sbjct: 71 LKHQSQPKSKTLPSPPLQIHDLSNPSSYASNASNATFVGNSTFVQTRKGKASDLADLAFE 130
Query: 133 AKSARDGAWYDVASFLSHRYLESSDPEVLVRFAGFGPEEDEWVNVRRNVRPRSLPCESSE 192
AKSARD AWYDV+SFL++R L + + EV VRF+GF DEWVNV+ +VR RS+P E SE
Sbjct: 131 AKSARDYAWYDVSSFLTYRVLRTGELEVRVRFSGFDNRHDEWVNVKTSVRERSIPVEPSE 190
Query: 193 CVAVLPGDLILCFQEGKEQALYFDAHVLDSQXXXXXXXXXXXXFLVRYDHDQSEEIVPLR 252
C V GDL+LCFQE ++QALY D HVL+ + FLVRY+ D +EE + L
Sbjct: 191 CGRVNVGDLLLCFQEREDQALYCDGHVLNIKRGIHDHARCNCVFLVRYELDNTEESLGLE 250
Query: 253 KVCRRPE 259
++CRRPE
Sbjct: 251 RICRRPE 257
>AT1G15215.3 | Symbols: | BEST Arabidopsis thaliana protein match
is: sequence-specific DNA binding transcription
factors;sequence-specific DNA binding
(TAIR:AT3G18380.1); Has 35333 Blast hits to 34131
proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
chr1:5238096-5239741 FORWARD LENGTH=252
Length = 252
Score = 163 bits (412), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/234 (40%), Positives = 130/234 (55%), Gaps = 4/234 (1%)
Query: 14 FTQNEVAEMEAILQEHNNAMPARDVLAVLAEKFSESPDRKGKITVQMKQVWNWFQNKRYA 73
FT +E+ +ME + +E + +D +A FS S +R GK ++ KQV WFQ K
Sbjct: 14 FTLSEIVDMENLYKELGDQSLHKDFCQTVASTFSCSVNRNGKSSITWKQVQIWFQEK--- 70
Query: 74 IRAKSSKTPGKLNITPMP-RDDSAPVRNMSQPIAAPILTGPGSVPTTAKVTPENSVMEFE 132
++ +S L P+ D S P S A + V T + + + FE
Sbjct: 71 LKHQSQPKSKTLPSPPLQIHDLSNPSSYASNASNATFVGNSTFVQTRKGKASDLADLAFE 130
Query: 133 AKSARDGAWYDVASFLSHRYLESSDPEVLVRFAGFGPEEDEWVNVRRNVRPRSLPCESSE 192
AKSARD AWYDV+SFL++R L + + EV VRF+GF DEWVNV+ +VR RS+P E SE
Sbjct: 131 AKSARDYAWYDVSSFLTYRVLRTGELEVRVRFSGFDNRHDEWVNVKTSVRERSIPVEPSE 190
Query: 193 CVAVLPGDLILCFQEGKEQALYFDAHVLDSQXXXXXXXXXXXXFLVRYDHDQSE 246
C V GDL+LCFQE ++QALY D HVL+ + FLVRY+ D +E
Sbjct: 191 CGRVNVGDLLLCFQEREDQALYCDGHVLNIKRGIHDHARCNCVFLVRYELDNTE 244
>AT1G15215.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: sequence-specific DNA binding transcription
factors;sequence-specific DNA binding
(TAIR:AT3G18380.1); Has 89 Blast hits to 86 proteins in
16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink). | chr1:5238238-5239741 FORWARD
LENGTH=231
Length = 231
Score = 155 bits (393), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 92/226 (40%), Positives = 124/226 (54%), Gaps = 4/226 (1%)
Query: 22 MEAILQEHNNAMPARDVLAVLAEKFSESPDRKGKITVQMKQVWNWFQNKRYAIRAKSSKT 81
ME + +E + +D +A FS S +R GK ++ KQV WFQ K ++ +S
Sbjct: 1 MENLYKELGDQSLHKDFCQTVASTFSCSVNRNGKSSITWKQVQIWFQEK---LKHQSQPK 57
Query: 82 PGKLNITPMP-RDDSAPVRNMSQPIAAPILTGPGSVPTTAKVTPENSVMEFEAKSARDGA 140
L P+ D S P S A + V T + + + FEAKSARD A
Sbjct: 58 SKTLPSPPLQIHDLSNPSSYASNASNATFVGNSTFVQTRKGKASDLADLAFEAKSARDYA 117
Query: 141 WYDVASFLSHRYLESSDPEVLVRFAGFGPEEDEWVNVRRNVRPRSLPCESSECVAVLPGD 200
WYDV+SFL++R L + + EV VRF+GF DEWVNV+ +VR RS+P E SEC V GD
Sbjct: 118 WYDVSSFLTYRVLRTGELEVRVRFSGFDNRHDEWVNVKTSVRERSIPVEPSECGRVNVGD 177
Query: 201 LILCFQEGKEQALYFDAHVLDSQXXXXXXXXXXXXFLVRYDHDQSE 246
L+LCFQE ++QALY D HVL+ + FLVRY+ D +E
Sbjct: 178 LLLCFQEREDQALYCDGHVLNIKRGIHDHARCNCVFLVRYELDNTE 223