Miyakogusa Predicted Gene

Lj3g3v0428800.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0428800.1 tr|G7K4N4|G7K4N4_MEDTR Pre-mRNA-splicing factor
ISY1-like protein OS=Medicago truncatula GN=MTR_5g09,89.11,0,ISY1
domain-like,NULL; GB DEF: DBJ|BAA86474.1 (HYPOTHETICAL PROTEIN
AT3G18790/MVE11_17),NULL; FAMILY,CUFF.40722.1
         (303 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G18790.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   365   e-101

>AT3G18790.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           chloroplast; EXPRESSED IN: 22 plant structures;
           EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
           DOMAIN/s: Isy1-like splicing (InterPro:IPR009360); Has
           1147 Blast hits to 965 proteins in 236 species: Archae -
           12; Bacteria - 13; Metazoa - 351; Fungi - 230; Plants -
           49; Viruses - 9; Other Eukaryotes - 483 (source: NCBI
           BLink). | chr3:6477853-6478755 FORWARD LENGTH=300
          Length = 300

 Score =  365 bits (936), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/303 (62%), Positives = 212/303 (69%), Gaps = 3/303 (0%)

Query: 1   MARNEEKAQSMLNRFITMKAXXXXXXXXXXXFLATECRDLSEADKWRQQIMREIGRKVAE 60
           MARNEEKAQSMLNRFIT K            +LA+ECRDL+EADKWRQQI+REIG KVAE
Sbjct: 1   MARNEEKAQSMLNRFITQKESEKKKPKERRPYLASECRDLAEADKWRQQILREIGSKVAE 60

Query: 61  IQNEGLGEHRLRDLNDEINKLIREKSHWERRIVELGGPNYTRHSAKMTDLDGNIVDVPNP 120
           IQNEGLGEHRLRDLNDEINKL+RE+ HWERRIVELGG NY++HSAKMTDL+GNI+DVPNP
Sbjct: 61  IQNEGLGEHRLRDLNDEINKLLRERYHWERRIVELGGHNYSKHSAKMTDLEGNIIDVPNP 120

Query: 121 SGRGPGYRYFGAAKKLPGVRELFDKPPELRKRRTRYDIYKRIDAAYYGYRDDEDGILERL 180
           SGRGPGYRYFGAAKKLPGVRELF+KPPELRKR+TRYDIYKRIDA+YYGYRDDEDGILE+L
Sbjct: 121 SGRGPGYRYFGAAKKLPGVRELFEKPPELRKRKTRYDIYKRIDASYYGYRDDEDGILEKL 180

Query: 181 EPSXXXXXXXXXXXXWYRLDRIRQEARKGVKSGEVAEVSAAVXXXXXXXXXXXXXXXXXX 240
           E              W RLD +R+EARKG  + EV  V  A                   
Sbjct: 181 ERKSEGGMRKRSVEEWRRLDEVRKEARKG--ASEVVSV-GAAAAAAREVLFEEEEDVVEE 237

Query: 241 XXXXXXXXXXXXXXFVVHVPLPDXXXXXXXXXXXXXXXXXNKYVSEDLMDEQSEAKDMLN 300
                         FVVHVPLPD                 +KY SEDL+++Q+EAK MLN
Sbjct: 238 ERMEREKEEEKEREFVVHVPLPDEKEIEKMVLEKKKMDLLSKYASEDLVEQQTEAKSMLN 297

Query: 301 IHR 303
           IHR
Sbjct: 298 IHR 300