Miyakogusa Predicted Gene

Lj3g3v0428780.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0428780.1 Non Chatacterized Hit- tr|I1M332|I1M332_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.8588
PE=,92.59,0,TNC18_HUMAN ISOFORM 2 OF O15417 - HOMO SAPIENS (HUMAN)
SOURCE:UNIPROTKB/SPLICEV,NULL; PHD FINGER TR,CUFF.40766.1
         (216 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G22140.2 | Symbols: EBS | PHD finger family protein / bromo-a...   391   e-109
AT4G22140.1 | Symbols: EBS | PHD finger family protein / bromo-a...   380   e-106
AT4G39100.1 | Symbols: SHL1 | PHD finger family protein / bromo-...   279   1e-75
AT4G04260.1 | Symbols:  | Bromo-adjacent homology (BAH) domain-c...   264   3e-71
AT4G39100.2 | Symbols: SHL1 | PHD finger family protein / bromo-...   235   2e-62
AT4G11560.1 | Symbols:  | bromo-adjacent homology (BAH) domain-c...    57   1e-08
AT4G14700.1 | Symbols: ATORC1A, ORC1A | origin recognition compl...    52   3e-07
AT4G23120.1 | Symbols:  | Bromo-adjacent homology (BAH) domain-c...    51   7e-07
AT4G12620.1 | Symbols: ORC1B, ATORC1B, UNE13 | origin of replica...    48   5e-06

>AT4G22140.2 | Symbols: EBS | PHD finger family protein /
           bromo-adjacent homology (BAH) domain-containing protein
           | chr4:11728093-11730230 REVERSE LENGTH=224
          Length = 224

 Score =  391 bits (1004), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 183/224 (81%), Positives = 201/224 (89%), Gaps = 8/224 (3%)

Query: 1   MAKTRPG--------KKDVDSYTIRGTNKVVKAGDCVLMRPSDTSKPPYVARVEKIEQDN 52
           MAKTRPG        +K++DSYTI+GTNKVV+AGDCVLMRPSD  KPPYVARVEKIE D 
Sbjct: 1   MAKTRPGVASKIKTGRKELDSYTIKGTNKVVRAGDCVLMRPSDAGKPPYVARVEKIEADA 60

Query: 53  RSNVRVRVRWYYRPEESIGGRRQFHGVKELFLSDHLDVQSAHTIEGKCIVHSFKNYTKLE 112
           R+NV+V  RWYYRPEES+GGRRQFHG KELFLSDH DVQSAHTIEGKCIVH+FKNYT+LE
Sbjct: 61  RNNVKVHCRWYYRPEESLGGRRQFHGAKELFLSDHFDVQSAHTIEGKCIVHTFKNYTRLE 120

Query: 113 HVGAEDYYCRFDYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTI 172
           +VGAEDYYCRF+YKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTI
Sbjct: 121 NVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTI 180

Query: 173 EEAKKLEHFMCSECSSDDDVKKPHATFSASPGSDIKVEPKRRKR 216
           EEAKKL+HF+C+ECSSDDDVKK    F++SP  D+KVE KRRKR
Sbjct: 181 EEAKKLDHFVCAECSSDDDVKKSQNGFTSSPADDVKVETKRRKR 224


>AT4G22140.1 | Symbols: EBS | PHD finger family protein /
           bromo-adjacent homology (BAH) domain-containing protein
           | chr4:11728556-11730230 REVERSE LENGTH=234
          Length = 234

 Score =  380 bits (976), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 177/217 (81%), Positives = 195/217 (89%), Gaps = 8/217 (3%)

Query: 1   MAKTRPG--------KKDVDSYTIRGTNKVVKAGDCVLMRPSDTSKPPYVARVEKIEQDN 52
           MAKTRPG        +K++DSYTI+GTNKVV+AGDCVLMRPSD  KPPYVARVEKIE D 
Sbjct: 1   MAKTRPGVASKIKTGRKELDSYTIKGTNKVVRAGDCVLMRPSDAGKPPYVARVEKIEADA 60

Query: 53  RSNVRVRVRWYYRPEESIGGRRQFHGVKELFLSDHLDVQSAHTIEGKCIVHSFKNYTKLE 112
           R+NV+V  RWYYRPEES+GGRRQFHG KELFLSDH DVQSAHTIEGKCIVH+FKNYT+LE
Sbjct: 61  RNNVKVHCRWYYRPEESLGGRRQFHGAKELFLSDHFDVQSAHTIEGKCIVHTFKNYTRLE 120

Query: 113 HVGAEDYYCRFDYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTI 172
           +VGAEDYYCRF+YKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTI
Sbjct: 121 NVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTI 180

Query: 173 EEAKKLEHFMCSECSSDDDVKKPHATFSASPGSDIKV 209
           EEAKKL+HF+C+ECSSDDDVKK    F++SP  D+KV
Sbjct: 181 EEAKKLDHFVCAECSSDDDVKKSQNGFTSSPADDVKV 217


>AT4G39100.1 | Symbols: SHL1 | PHD finger family protein /
           bromo-adjacent homology (BAH) domain-containing protein
           | chr4:18218298-18220134 REVERSE LENGTH=228
          Length = 228

 Score =  279 bits (713), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 132/214 (61%), Positives = 159/214 (74%), Gaps = 3/214 (1%)

Query: 1   MAKTRPGKKDVDSYTIRGTNKVVKAGDCVLMRPSDTSKPPYVARVEKIEQDNR-SNVRVR 59
           M K +  +K + SY ++  NK ++ GD VLMR S+  KP YVARVE IE D R S+ +VR
Sbjct: 1   MPKQKAPRKQLKSYKLKHINKSIQEGDAVLMRSSEPGKPSYVARVEAIETDARGSHAKVR 60

Query: 60  VRWYYRPEESIGGRRQFHGVKELFLSDHLDVQSAHTIEGKCIVHSFKNYTKLEHVGAEDY 119
           VRWYYRPEESIGGRRQFHG KE+FLSDH D QSA TIEGKC VHSF +YTKL+ VG +D+
Sbjct: 61  VRWYYRPEESIGGRRQFHGAKEVFLSDHFDFQSADTIEGKCKVHSFSSYTKLDSVGNDDF 120

Query: 120 YCRFDYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLE 179
           +CRF+Y + TGAF PDRV V+CKCEMPYNPDDLMVQCE C +W+HP+C+G TIEEAKK +
Sbjct: 121 FCRFEYNSTTGAFDPDRVTVFCKCEMPYNPDDLMVQCEECSEWFHPSCIGTTIEEAKKPD 180

Query: 180 HFMCSECSSDDDVKKPHATFSASPGSDIKVEPKR 213
           +F C ECS     +  H + S S   D KV  KR
Sbjct: 181 NFYCEECSPQQ--QNLHNSNSTSNNRDAKVNGKR 212


>AT4G04260.1 | Symbols:  | Bromo-adjacent homology (BAH)
           domain-containing protein | chr4:2054636-2055849 FORWARD
           LENGTH=193
          Length = 193

 Score =  264 bits (675), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 131/179 (73%), Positives = 146/179 (81%), Gaps = 2/179 (1%)

Query: 31  MRPSDTSKPPYVARVEKIEQDNRSNVRVRVRWYYRPEESIGGRRQFHGVKELFLSDHLDV 90
           MRPSD  K PYVARVEKIE D R+NV+V  RWYY PEES GGRRQ HG KELFLSDH DV
Sbjct: 1   MRPSDAGKAPYVARVEKIEADARNNVKVHCRWYYCPEESHGGRRQLHGAKELFLSDHFDV 60

Query: 91  QSAHTIEGKCIVHSFKNYTKLEHVGAEDYYCRFDYKAATGAFTPDRVAVYCKCEMPYNPD 150
           QSAHTIEGKCIVH+FKNYT+LE+VG EDYYC FDYKAATGAFTPDRVAVY KCEMPYN D
Sbjct: 61  QSAHTIEGKCIVHTFKNYTRLENVGVEDYYCIFDYKAATGAFTPDRVAVYYKCEMPYNSD 120

Query: 151 DLMVQCEGCKDWYHPACVGMTIEEAKKLEHFMCSECSSDDD-VKKPHATFSASPGSDIK 208
           +LM +   C    H ACVG+TIEEAKKLEHF+C ECSSD+D VK+    F++S  +D+K
Sbjct: 121 ELM-ELLLCHYRVHLACVGVTIEEAKKLEHFVCVECSSDEDGVKRFQNGFASSTTNDLK 178


>AT4G39100.2 | Symbols: SHL1 | PHD finger family protein /
           bromo-adjacent homology (BAH) domain-containing protein
           | chr4:18218712-18220134 REVERSE LENGTH=169
          Length = 169

 Score =  235 bits (600), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 108/163 (66%), Positives = 128/163 (78%), Gaps = 1/163 (0%)

Query: 1   MAKTRPGKKDVDSYTIRGTNKVVKAGDCVLMRPSDTSKPPYVARVEKIEQDNR-SNVRVR 59
           M K +  +K + SY ++  NK ++ GD VLMR S+  KP YVARVE IE D R S+ +VR
Sbjct: 1   MPKQKAPRKQLKSYKLKHINKSIQEGDAVLMRSSEPGKPSYVARVEAIETDARGSHAKVR 60

Query: 60  VRWYYRPEESIGGRRQFHGVKELFLSDHLDVQSAHTIEGKCIVHSFKNYTKLEHVGAEDY 119
           VRWYYRPEESIGGRRQFHG KE+FLSDH D QSA TIEGKC VHSF +YTKL+ VG +D+
Sbjct: 61  VRWYYRPEESIGGRRQFHGAKEVFLSDHFDFQSADTIEGKCKVHSFSSYTKLDSVGNDDF 120

Query: 120 YCRFDYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDW 162
           +CRF+Y + TGAF PDRV V+CKCEMPYNPDDLMVQCE C +W
Sbjct: 121 FCRFEYNSTTGAFDPDRVTVFCKCEMPYNPDDLMVQCEECSEW 163


>AT4G11560.1 | Symbols:  | bromo-adjacent homology (BAH)
           domain-containing protein | chr4:7000095-7003445 REVERSE
           LENGTH=587
          Length = 587

 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)

Query: 29  VLMRPSDTSKPPYVARVEKIEQDNRSNVRVRVRWYYRPEESI---GGRRQFHGVKELFLS 85
           VL+ P D S+ PYVA ++ I Q    ++ +  +W+YRPEE+    GG  Q    +ELF S
Sbjct: 137 VLLVPEDKSQKPYVAIIKDITQTKDGSMMILGQWFYRPEEAEKRGGGNWQSSDTRELFYS 196

Query: 86  DHLDVQSAHTIEGKCIVHSFKNYTKL 111
            H D   A ++  +C+V+    + +L
Sbjct: 197 FHRDEVPAESVMHRCVVYFVPAHKQL 222


>AT4G14700.1 | Symbols: ATORC1A, ORC1A | origin recognition complex
           1 | chr4:8422236-8424665 FORWARD LENGTH=809
          Length = 809

 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 53/103 (51%), Gaps = 1/103 (0%)

Query: 31  MRPSDTSKPPYVARVEKIEQDNRSNVR-VRVRWYYRPEESIGGRRQFHGVKELFLSDHLD 89
           M+    S   + AR+EK+ ++    V  +R RWY  PEE++ GR++ +  +EL+L++   
Sbjct: 235 MKEKLLSSDLWAARIEKLWKEVDDGVYWIRARWYMIPEETVLGRQRHNLKRELYLTNDFA 294

Query: 90  VQSAHTIEGKCIVHSFKNYTKLEHVGAEDYYCRFDYKAATGAF 132
                 +   C V   K ++K  + G + + C ++Y    G+F
Sbjct: 295 DIEMECVLRHCFVKCPKEFSKASNDGDDVFLCEYEYDVHWGSF 337


>AT4G23120.1 | Symbols:  | Bromo-adjacent homology (BAH)
           domain-containing protein | chr4:12113308-12115523
           FORWARD LENGTH=360
          Length = 360

 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 5/81 (6%)

Query: 27  DCVLMRPSDTSKPPYVARVEKI-EQDNRSNVRVRVRWYYRPEE---SIGGRRQFHGVKEL 82
           D VL+ P D  KP YVA ++ I  Q    +V++ V+W YRPEE      G  +  G ++L
Sbjct: 63  DSVLLVPEDGEKP-YVAIIKDIYTQRKEGHVKLEVQWLYRPEEVEKKYVGNWKSKGSRDL 121

Query: 83  FLSDHLDVQSAHTIEGKCIVH 103
           F S H D   A +++  CIVH
Sbjct: 122 FYSFHRDEVFAESVKDDCIVH 142


>AT4G12620.1 | Symbols: ORC1B, ATORC1B, UNE13 | origin of
           replication complex 1B | chr4:7459812-7462253 REVERSE
           LENGTH=813
          Length = 813

 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 1/103 (0%)

Query: 31  MRPSDTSKPPYVARVEKIEQDNRSNV-RVRVRWYYRPEESIGGRRQFHGVKELFLSDHLD 89
           MR    S   + AR++K+ ++    V  +R RWY  PEE++ GR+  +  +EL+L++   
Sbjct: 238 MREKLLSGDLWAARIDKLWKEVDDGVYWIRARWYMIPEETVSGRQPHNLKRELYLTNDFA 297

Query: 90  VQSAHTIEGKCIVHSFKNYTKLEHVGAEDYYCRFDYKAATGAF 132
                 I   C V   K ++K  + G + + C ++Y     +F
Sbjct: 298 DIEMECILRHCSVKCPKEFSKASNDGDDVFLCEYEYDVHWRSF 340