Miyakogusa Predicted Gene
- Lj3g3v0428550.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0428550.1 tr|I3T024|I3T024_LOTJA Malate dehydrogenase
OS=Lotus japonicus PE=2 SV=1,98.17,0,Ldh_1_N,Lactate/malate
dehydrogenase, N-terminal; MALATE DEHYDROGENASE,Malate dehydrogenase,
type 1;,CUFF.40823.1
(275 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G53240.1 | Symbols: mMDH1 | Lactate/malate dehydrogenase fami... 446 e-126
AT3G15020.1 | Symbols: mMDH2 | Lactate/malate dehydrogenase fami... 442 e-124
AT3G15020.2 | Symbols: mMDH2 | Lactate/malate dehydrogenase fami... 442 e-124
AT2G22780.1 | Symbols: PMDH1 | peroxisomal NAD-malate dehydrogen... 326 1e-89
AT3G47520.1 | Symbols: MDH | malate dehydrogenase | chr3:1751365... 310 8e-85
AT5G09660.4 | Symbols: PMDH2 | peroxisomal NAD-malate dehydrogen... 306 1e-83
AT5G09660.3 | Symbols: PMDH2 | peroxisomal NAD-malate dehydrogen... 306 1e-83
AT5G09660.1 | Symbols: PMDH2 | peroxisomal NAD-malate dehydrogen... 306 1e-83
AT5G09660.2 | Symbols: PMDH2 | peroxisomal NAD-malate dehydrogen... 305 2e-83
>AT1G53240.1 | Symbols: mMDH1 | Lactate/malate dehydrogenase family
protein | chr1:19854966-19856802 REVERSE LENGTH=341
Length = 341
Score = 446 bits (1148), Expect = e-126, Method: Compositional matrix adjust.
Identities = 216/275 (78%), Positives = 239/275 (86%)
Query: 1 MMKPSMLRSAVSRCSQLSRRGYATNPVPERKVAVLGAAGGIGQPLSLLMKLNPLVSSLSL 60
M + ++RS+ S + RR +++ VPERKVA+LGAAGGIGQPL+LLMKLNPLVSSLSL
Sbjct: 1 MFRSMLVRSSASAKQAVIRRSFSSGSVPERKVAILGAAGGIGQPLALLMKLNPLVSSLSL 60
Query: 61 YDIAGTPGVAADVSHINTRSEVVGYQGEEQLGKALEGADIVIIPAGVPRKPGMTRDDLFN 120
YDIA TPGVAADV HINTRSEVVGY G++ L KALEGAD+VIIPAGVPRKPGMTRDDLFN
Sbjct: 61 YDIANTPGVAADVGHINTRSEVVGYMGDDNLAKALEGADLVIIPAGVPRKPGMTRDDLFN 120
Query: 121 INAGIVKGLCSAIAKYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDERRLFGVTTLDVV 180
INAGIVK LC+AIAKYCPHAL+NMISNPVNSTVPIAAE+FKKAG YDE++LFGVTTLDVV
Sbjct: 121 INAGIVKNLCTAIAKYCPHALINMISNPVNSTVPIAAEIFKKAGMYDEKKLFGVTTLDVV 180
Query: 181 RAKTFYAGXXXXXXXXXXXXXXGGHAGITILPLFSQATPQANLDHDLIQALTKRTQDGGT 240
RA+TFYAG GGHAG+TILPLFSQATPQANL D++ ALTKRTQDGGT
Sbjct: 181 RARTFYAGKANVPVAEVNVPVIGGHAGVTILPLFSQATPQANLSSDILTALTKRTQDGGT 240
Query: 241 EVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVP 275
EVVEAKAGKGSATLSMAYAGA+FADACLKGLNGVP
Sbjct: 241 EVVEAKAGKGSATLSMAYAGALFADACLKGLNGVP 275
>AT3G15020.1 | Symbols: mMDH2 | Lactate/malate dehydrogenase family
protein | chr3:5056139-5057941 FORWARD LENGTH=341
Length = 341
Score = 442 bits (1137), Expect = e-124, Method: Compositional matrix adjust.
Identities = 219/275 (79%), Positives = 237/275 (86%)
Query: 1 MMKPSMLRSAVSRCSQLSRRGYATNPVPERKVAVLGAAGGIGQPLSLLMKLNPLVSSLSL 60
M + ++RSA L RRG+A+ VP+RKV +LGAAGGIGQPLSLLMKLNPLVSSLSL
Sbjct: 1 MFRSMIVRSASPVKQGLLRRGFASESVPDRKVVILGAAGGIGQPLSLLMKLNPLVSSLSL 60
Query: 61 YDIAGTPGVAADVSHINTRSEVVGYQGEEQLGKALEGADIVIIPAGVPRKPGMTRDDLFN 120
YDIA TPGVAADV HINTRS+V GY G++ LGKALEGAD+VIIPAGVPRKPGMTRDDLFN
Sbjct: 61 YDIANTPGVAADVGHINTRSQVSGYMGDDDLGKALEGADLVIIPAGVPRKPGMTRDDLFN 120
Query: 121 INAGIVKGLCSAIAKYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDERRLFGVTTLDVV 180
INAGIVK L AIAKYCP ALVNMISNPVNSTVPIAAE+FKKAGTYDE++LFGVTTLDVV
Sbjct: 121 INAGIVKNLSIAIAKYCPQALVNMISNPVNSTVPIAAEIFKKAGTYDEKKLFGVTTLDVV 180
Query: 181 RAKTFYAGXXXXXXXXXXXXXXGGHAGITILPLFSQATPQANLDHDLIQALTKRTQDGGT 240
RA+TFYAG GGHAGITILPLFSQA+PQANL DLI+ALTKRTQDGGT
Sbjct: 181 RARTFYAGKSDVNVAEVNVPVVGGHAGITILPLFSQASPQANLSDDLIRALTKRTQDGGT 240
Query: 241 EVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVP 275
EVVEAKAGKGSATLSMAYAGA+FADACLKGLNGVP
Sbjct: 241 EVVEAKAGKGSATLSMAYAGALFADACLKGLNGVP 275
>AT3G15020.2 | Symbols: mMDH2 | Lactate/malate dehydrogenase family
protein | chr3:5056139-5057865 FORWARD LENGTH=316
Length = 316
Score = 442 bits (1136), Expect = e-124, Method: Compositional matrix adjust.
Identities = 219/275 (79%), Positives = 237/275 (86%)
Query: 1 MMKPSMLRSAVSRCSQLSRRGYATNPVPERKVAVLGAAGGIGQPLSLLMKLNPLVSSLSL 60
M + ++RSA L RRG+A+ VP+RKV +LGAAGGIGQPLSLLMKLNPLVSSLSL
Sbjct: 1 MFRSMIVRSASPVKQGLLRRGFASESVPDRKVVILGAAGGIGQPLSLLMKLNPLVSSLSL 60
Query: 61 YDIAGTPGVAADVSHINTRSEVVGYQGEEQLGKALEGADIVIIPAGVPRKPGMTRDDLFN 120
YDIA TPGVAADV HINTRS+V GY G++ LGKALEGAD+VIIPAGVPRKPGMTRDDLFN
Sbjct: 61 YDIANTPGVAADVGHINTRSQVSGYMGDDDLGKALEGADLVIIPAGVPRKPGMTRDDLFN 120
Query: 121 INAGIVKGLCSAIAKYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDERRLFGVTTLDVV 180
INAGIVK L AIAKYCP ALVNMISNPVNSTVPIAAE+FKKAGTYDE++LFGVTTLDVV
Sbjct: 121 INAGIVKNLSIAIAKYCPQALVNMISNPVNSTVPIAAEIFKKAGTYDEKKLFGVTTLDVV 180
Query: 181 RAKTFYAGXXXXXXXXXXXXXXGGHAGITILPLFSQATPQANLDHDLIQALTKRTQDGGT 240
RA+TFYAG GGHAGITILPLFSQA+PQANL DLI+ALTKRTQDGGT
Sbjct: 181 RARTFYAGKSDVNVAEVNVPVVGGHAGITILPLFSQASPQANLSDDLIRALTKRTQDGGT 240
Query: 241 EVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVP 275
EVVEAKAGKGSATLSMAYAGA+FADACLKGLNGVP
Sbjct: 241 EVVEAKAGKGSATLSMAYAGALFADACLKGLNGVP 275
>AT2G22780.1 | Symbols: PMDH1 | peroxisomal NAD-malate dehydrogenase
1 | chr2:9689995-9691923 REVERSE LENGTH=354
Length = 354
Score = 326 bits (835), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 170/273 (62%), Positives = 199/273 (72%), Gaps = 1/273 (0%)
Query: 2 MKPSMLRSAVSRCSQLSRRG-YATNPVPERKVAVLGAAGGIGQPLSLLMKLNPLVSSLSL 60
+ P L + ++ S L+R A P KVA+LGAAGGIGQPL++LMK+NPLVS L L
Sbjct: 14 LNPPNLHNQIADGSGLNRVACRAKGGSPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHL 73
Query: 61 YDIAGTPGVAADVSHINTRSEVVGYQGEEQLGKALEGADIVIIPAGVPRKPGMTRDDLFN 120
YD+A PGV AD+SH++T + V G+ G+ QL +AL G D+VIIPAGVPRKPGMTRDDLFN
Sbjct: 74 YDVANAPGVTADISHMDTSAVVRGFLGQPQLEEALTGMDLVIIPAGVPRKPGMTRDDLFN 133
Query: 121 INAGIVKGLCSAIAKYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDERRLFGVTTLDVV 180
INAGIV+ L AIAK CP A+VN+ISNPVNSTVPIAAEVFKKAGT+D ++L GVT LDVV
Sbjct: 134 INAGIVRTLSEAIAKCCPKAIVNIISNPVNSTVPIAAEVFKKAGTFDPKKLMGVTMLDVV 193
Query: 181 RAKTFYAGXXXXXXXXXXXXXXGGHAGITILPLFSQATPQANLDHDLIQALTKRTQDGGT 240
RA TF A GGHAG+TILPL SQ P + I+ LT R Q+GGT
Sbjct: 194 RANTFVAEVMSLDPREVEVPVVGGHAGVTILPLLSQVKPPCSFTQKEIEYLTDRIQNGGT 253
Query: 241 EVVEAKAGKGSATLSMAYAGAIFADACLKGLNG 273
EVVEAKAG GSATLSMAYA FADACL+GL G
Sbjct: 254 EVVEAKAGAGSATLSMAYAAVEFADACLRGLRG 286
>AT3G47520.1 | Symbols: MDH | malate dehydrogenase |
chr3:17513657-17514868 FORWARD LENGTH=403
Length = 403
Score = 310 bits (793), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 156/267 (58%), Positives = 190/267 (71%)
Query: 7 LRSAVSRCSQLSRRGYATNPVPERKVAVLGAAGGIGQPLSLLMKLNPLVSSLSLYDIAGT 66
LR +V++ ++ Y KVAVLGAAGGIGQPLSLL+K++PLVS+L LYDIA
Sbjct: 60 LRGSVTKAQTSDKKPYGFKINASYKVAVLGAAGGIGQPLSLLIKMSPLVSTLHLYDIANV 119
Query: 67 PGVAADVSHINTRSEVVGYQGEEQLGKALEGADIVIIPAGVPRKPGMTRDDLFNINAGIV 126
GVAAD+SH NT S+V + G +L L+ ++V+IPAGVPRKPGMTRDDLFNINA IV
Sbjct: 120 KGVAADLSHCNTPSQVRDFTGPSELADCLKDVNVVVIPAGVPRKPGMTRDDLFNINANIV 179
Query: 127 KGLCSAIAKYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDERRLFGVTTLDVVRAKTFY 186
K L A+A+ CP+A +++ISNPVNSTVPIAAEV KK G YD ++LFGVTTLDVVRA TF
Sbjct: 180 KTLVEAVAENCPNAFIHIISNPVNSTVPIAAEVLKKKGVYDPKKLFGVTTLDVVRANTFV 239
Query: 187 AGXXXXXXXXXXXXXXGGHAGITILPLFSQATPQANLDHDLIQALTKRTQDGGTEVVEAK 246
+ GGHAGITILPL S+ P N + IQ LT R Q+ GTEVV+AK
Sbjct: 240 SQKKNLKLIDVDVPVIGGHAGITILPLLSKTKPSVNFTDEEIQELTVRIQNAGTEVVDAK 299
Query: 247 AGKGSATLSMAYAGAIFADACLKGLNG 273
AG GSATLSMAYA A F ++ L+ L+G
Sbjct: 300 AGAGSATLSMAYAAARFVESSLRALDG 326
>AT5G09660.4 | Symbols: PMDH2 | peroxisomal NAD-malate dehydrogenase
2 | chr5:2993691-2995551 REVERSE LENGTH=363
Length = 363
Score = 306 bits (784), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 165/246 (67%), Positives = 187/246 (76%)
Query: 28 PERKVAVLGAAGGIGQPLSLLMKLNPLVSSLSLYDIAGTPGVAADVSHINTRSEVVGYQG 87
P KVA+LGAAGGIGQ LSLLMK+NPLVS L LYD+ PGV ADVSH++T + V G+ G
Sbjct: 41 PGFKVAILGAAGGIGQSLSLLMKMNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLG 100
Query: 88 EEQLGKALEGADIVIIPAGVPRKPGMTRDDLFNINAGIVKGLCSAIAKYCPHALVNMISN 147
+QL AL G D+VIIPAG+PRKPGMTRDDLF INAGIVK LC +AK CP+A+VN+ISN
Sbjct: 101 AKQLEDALTGMDLVIIPAGIPRKPGMTRDDLFKINAGIVKTLCEGVAKCCPNAIVNLISN 160
Query: 148 PVNSTVPIAAEVFKKAGTYDERRLFGVTTLDVVRAKTFYAGXXXXXXXXXXXXXXGGHAG 207
PVNSTVPIAAEVFKKAGTYD ++L GVTTLDV RA TF A GGHAG
Sbjct: 161 PVNSTVPIAAEVFKKAGTYDPKKLLGVTTLDVARANTFVAEVLGLDPREVDVPVVGGHAG 220
Query: 208 ITILPLFSQATPQANLDHDLIQALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADAC 267
+TILPL SQ P ++ I+ LT R Q+GGTEVVEAKAG GSATLSMAYA A FADAC
Sbjct: 221 VTILPLLSQVKPPSSFTPQEIEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADAC 280
Query: 268 LKGLNG 273
L+GL G
Sbjct: 281 LRGLRG 286
>AT5G09660.3 | Symbols: PMDH2 | peroxisomal NAD-malate dehydrogenase
2 | chr5:2993691-2995169 REVERSE LENGTH=342
Length = 342
Score = 306 bits (783), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 165/246 (67%), Positives = 187/246 (76%)
Query: 28 PERKVAVLGAAGGIGQPLSLLMKLNPLVSSLSLYDIAGTPGVAADVSHINTRSEVVGYQG 87
P KVA+LGAAGGIGQ LSLLMK+NPLVS L LYD+ PGV ADVSH++T + V G+ G
Sbjct: 20 PGFKVAILGAAGGIGQSLSLLMKMNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLG 79
Query: 88 EEQLGKALEGADIVIIPAGVPRKPGMTRDDLFNINAGIVKGLCSAIAKYCPHALVNMISN 147
+QL AL G D+VIIPAG+PRKPGMTRDDLF INAGIVK LC +AK CP+A+VN+ISN
Sbjct: 80 AKQLEDALTGMDLVIIPAGIPRKPGMTRDDLFKINAGIVKTLCEGVAKCCPNAIVNLISN 139
Query: 148 PVNSTVPIAAEVFKKAGTYDERRLFGVTTLDVVRAKTFYAGXXXXXXXXXXXXXXGGHAG 207
PVNSTVPIAAEVFKKAGTYD ++L GVTTLDV RA TF A GGHAG
Sbjct: 140 PVNSTVPIAAEVFKKAGTYDPKKLLGVTTLDVARANTFVAEVLGLDPREVDVPVVGGHAG 199
Query: 208 ITILPLFSQATPQANLDHDLIQALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADAC 267
+TILPL SQ P ++ I+ LT R Q+GGTEVVEAKAG GSATLSMAYA A FADAC
Sbjct: 200 VTILPLLSQVKPPSSFTPQEIEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADAC 259
Query: 268 LKGLNG 273
L+GL G
Sbjct: 260 LRGLRG 265
>AT5G09660.1 | Symbols: PMDH2 | peroxisomal NAD-malate dehydrogenase
2 | chr5:2993645-2995551 REVERSE LENGTH=354
Length = 354
Score = 306 bits (783), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 165/246 (67%), Positives = 187/246 (76%)
Query: 28 PERKVAVLGAAGGIGQPLSLLMKLNPLVSSLSLYDIAGTPGVAADVSHINTRSEVVGYQG 87
P KVA+LGAAGGIGQ LSLLMK+NPLVS L LYD+ PGV ADVSH++T + V G+ G
Sbjct: 41 PGFKVAILGAAGGIGQSLSLLMKMNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLG 100
Query: 88 EEQLGKALEGADIVIIPAGVPRKPGMTRDDLFNINAGIVKGLCSAIAKYCPHALVNMISN 147
+QL AL G D+VIIPAG+PRKPGMTRDDLF INAGIVK LC +AK CP+A+VN+ISN
Sbjct: 101 AKQLEDALTGMDLVIIPAGIPRKPGMTRDDLFKINAGIVKTLCEGVAKCCPNAIVNLISN 160
Query: 148 PVNSTVPIAAEVFKKAGTYDERRLFGVTTLDVVRAKTFYAGXXXXXXXXXXXXXXGGHAG 207
PVNSTVPIAAEVFKKAGTYD ++L GVTTLDV RA TF A GGHAG
Sbjct: 161 PVNSTVPIAAEVFKKAGTYDPKKLLGVTTLDVARANTFVAEVLGLDPREVDVPVVGGHAG 220
Query: 208 ITILPLFSQATPQANLDHDLIQALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADAC 267
+TILPL SQ P ++ I+ LT R Q+GGTEVVEAKAG GSATLSMAYA A FADAC
Sbjct: 221 VTILPLLSQVKPPSSFTPQEIEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADAC 280
Query: 268 LKGLNG 273
L+GL G
Sbjct: 281 LRGLRG 286
>AT5G09660.2 | Symbols: PMDH2 | peroxisomal NAD-malate dehydrogenase
2 | chr5:2993645-2995169 REVERSE LENGTH=333
Length = 333
Score = 305 bits (782), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 165/246 (67%), Positives = 187/246 (76%)
Query: 28 PERKVAVLGAAGGIGQPLSLLMKLNPLVSSLSLYDIAGTPGVAADVSHINTRSEVVGYQG 87
P KVA+LGAAGGIGQ LSLLMK+NPLVS L LYD+ PGV ADVSH++T + V G+ G
Sbjct: 20 PGFKVAILGAAGGIGQSLSLLMKMNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLG 79
Query: 88 EEQLGKALEGADIVIIPAGVPRKPGMTRDDLFNINAGIVKGLCSAIAKYCPHALVNMISN 147
+QL AL G D+VIIPAG+PRKPGMTRDDLF INAGIVK LC +AK CP+A+VN+ISN
Sbjct: 80 AKQLEDALTGMDLVIIPAGIPRKPGMTRDDLFKINAGIVKTLCEGVAKCCPNAIVNLISN 139
Query: 148 PVNSTVPIAAEVFKKAGTYDERRLFGVTTLDVVRAKTFYAGXXXXXXXXXXXXXXGGHAG 207
PVNSTVPIAAEVFKKAGTYD ++L GVTTLDV RA TF A GGHAG
Sbjct: 140 PVNSTVPIAAEVFKKAGTYDPKKLLGVTTLDVARANTFVAEVLGLDPREVDVPVVGGHAG 199
Query: 208 ITILPLFSQATPQANLDHDLIQALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADAC 267
+TILPL SQ P ++ I+ LT R Q+GGTEVVEAKAG GSATLSMAYA A FADAC
Sbjct: 200 VTILPLLSQVKPPSSFTPQEIEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADAC 259
Query: 268 LKGLNG 273
L+GL G
Sbjct: 260 LRGLRG 265