Miyakogusa Predicted Gene

Lj3g3v0428490.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0428490.1 Non Chatacterized Hit- tr|G5DWT5|G5DWT5_SILLA
Putative uncharacterized protein (Fragment) OS=Silene
,39.85,1e-18,seg,NULL; coiled-coil,NULL,CUFF.40702.1
         (437 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G53250.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   159   5e-39
AT1G53800.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   100   2e-21
AT1G53800.2 | Symbols:  | unknown protein; BEST Arabidopsis thal...   100   2e-21

>AT1G53250.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G53800.1); Has 11909 Blast hits to 7704
           proteins in 757 species: Archae - 51; Bacteria - 1338;
           Metazoa - 4550; Fungi - 987; Plants - 464; Viruses - 24;
           Other Eukaryotes - 4495 (source: NCBI BLink). |
           chr1:19857468-19859156 FORWARD LENGTH=371
          Length = 371

 Score =  159 bits (401), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 78/134 (58%), Positives = 100/134 (74%)

Query: 98  VVGLSDSLEIESLSRKAVKERMRRFKIGLANKGRVPWNKGRKHSAETRERIKRRTSEALR 157
           V  ++   E +S S + +KE  RR KIGLANKG+VPWNKGRKHS +TR RIK+RT EAL 
Sbjct: 83  VKAMNKDTEADSDSDRKIKEEERRRKIGLANKGKVPWNKGRKHSEDTRRRIKQRTIEALT 142

Query: 158 EPKVRKKMAEHPRFHSDKIKEKISYSLRRVWQERLKSKRFREQIFLSWEQCIANAAKKGG 217
            PKVRKKM++H + HS++ KEKI  S+++VW ER +SKR +E+   SW + IA AA+KGG
Sbjct: 143 NPKVRKKMSDHQQPHSNETKEKIRASVKQVWAERSRSKRLKEKFMSSWSENIAEAARKGG 202

Query: 218 CGQEELDWDSYNKI 231
            G+ ELDWDSY KI
Sbjct: 203 SGEAELDWDSYEKI 216



 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 7/178 (3%)

Query: 258 EKFIQSWSECLXXXXXXXXXXXXXLDWDSYEKIQEEMFLLNQIXXXXXXXXXXXXXXXXX 317
           EKF+ SWSE +             LDWDSYEKI+++ F   Q+                 
Sbjct: 184 EKFMSSWSENIAEAARKGGSGEAELDWDSYEKIKQD-FSSEQLQLAEEKARAKEQTKMIA 242

Query: 318 XXXXXXXXXXXVMLNQKKKDLRERIKGRGNIKSQLCKNANEDGEAALEITQQFKLDTKLT 377
                          +KKK+  E+ +  G I+    +  N        I  + KL  +LT
Sbjct: 243 KEAAKARTEKMRRAAEKKKEREEKDRREGKIRKPKQERENPT------IASRSKLKKRLT 296

Query: 378 KINISKNINSEVAREGGFSNSIYPTYNKLDLEVIKREKLRKEASFADRIQAARLKKGN 435
           KI+  K    ++A       S+     KLDL++I++E+ R + S AD+IQAA+ ++G+
Sbjct: 297 KIHKKKTSLGKIAIGTDRVVSVAAKLEKLDLDLIRKERTRGDISLADQIQAAKNQRGS 354


>AT1G53800.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G53250.1); Has 1136 Blast hits to 882 proteins
           in 242 species: Archae - 2; Bacteria - 216; Metazoa -
           257; Fungi - 77; Plants - 87; Viruses - 4; Other
           Eukaryotes - 493 (source: NCBI BLink). |
           chr1:20081888-20084320 FORWARD LENGTH=568
          Length = 568

 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/114 (40%), Positives = 72/114 (63%)

Query: 116 KERMRRFKIGLANKGRVPWNKGRKHSAETRERIKRRTSEALREPKVRKKMAEHPRFHSDK 175
           +E++RR +I  AN+G  PWNKGRKHS ET ++I+ RT  A+++PK++ K+A      + +
Sbjct: 104 REKLRRMRISKANRGNTPWNKGRKHSPETLQKIRERTKIAMQDPKIKMKLANLGHAQNKE 163

Query: 176 IKEKISYSLRRVWQERLKSKRFREQIFLSWEQCIANAAKKGGCGQEELDWDSYN 229
            + KI   +R  W  R + ++ +E     W+  +A AAK+G   +EEL WDSYN
Sbjct: 164 TRMKIGEGVRMRWARRKERRKVQETCHFEWQNLLAEAAKQGYTDEEELQWDSYN 217


>AT1G53800.2 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G53250.1); Has 35333 Blast hits to 34131
           proteins in 2444 species: Archae - 798; Bacteria -
           22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
           - 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
           chr1:20081888-20084320 FORWARD LENGTH=572
          Length = 572

 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/114 (40%), Positives = 72/114 (63%)

Query: 116 KERMRRFKIGLANKGRVPWNKGRKHSAETRERIKRRTSEALREPKVRKKMAEHPRFHSDK 175
           +E++RR +I  AN+G  PWNKGRKHS ET ++I+ RT  A+++PK++ K+A      + +
Sbjct: 108 REKLRRMRISKANRGNTPWNKGRKHSPETLQKIRERTKIAMQDPKIKMKLANLGHAQNKE 167

Query: 176 IKEKISYSLRRVWQERLKSKRFREQIFLSWEQCIANAAKKGGCGQEELDWDSYN 229
            + KI   +R  W  R + ++ +E     W+  +A AAK+G   +EEL WDSYN
Sbjct: 168 TRMKIGEGVRMRWARRKERRKVQETCHFEWQNLLAEAAKQGYTDEEELQWDSYN 221