Miyakogusa Predicted Gene

Lj3g3v0428470.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0428470.1 Non Chatacterized Hit- tr|E0CSA7|E0CSA7_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,50.5,1e-18,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,gene.Ljchr3_pseudomol_20120830.path1.gene681.1
         (100 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G16670.1 | Symbols:  | Protein kinase superfamily protein | c...    68   1e-12
AT3G09010.1 | Symbols:  | Protein kinase superfamily protein | c...    50   3e-07

>AT1G16670.1 | Symbols:  | Protein kinase superfamily protein |
           chr1:5697846-5699492 FORWARD LENGTH=390
          Length = 390

 Score = 67.8 bits (164), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/68 (45%), Positives = 47/68 (69%)

Query: 2   DEAVRFCKISLLCTQDSPQNRPSMSTVLGMLRGRREVNEENVTKPGMIFEFVQAMDEGKQ 61
           +EA R+ KI LLCTQDSP+ RPSMSTV+ +L G ++++ + +++PG+I +F+     G  
Sbjct: 284 EEACRYLKIGLLCTQDSPKLRPSMSTVVRLLTGEKDIDYKKISRPGLISDFMDLKVRGPV 343

Query: 62  KFKTEVEN 69
             KTE  N
Sbjct: 344 ATKTEQVN 351


>AT3G09010.1 | Symbols:  | Protein kinase superfamily protein |
           chr3:2750285-2752086 FORWARD LENGTH=393
          Length = 393

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/49 (48%), Positives = 35/49 (71%), Gaps = 3/49 (6%)

Query: 2   DEAVRFCKISLLCTQDSPQNRPSMSTVLGMLRGRRE--VNEENVTKPGM 48
           DE  RF K++L CTQ + Q RP+M  V+ MLR R+E  +NE+ +T+PG+
Sbjct: 286 DEVTRFIKVALFCTQAAAQKRPNMKQVMEMLR-RKELNLNEDALTEPGV 333