Miyakogusa Predicted Gene
- Lj3g3v0428420.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0428420.2 Non Chatacterized Hit- tr|C5YWM0|C5YWM0_SORBI
Putative uncharacterized protein Sb09g030170
OS=Sorghu,41.33,0.0000004,TPR REPEAT CONTAINING PROTEIN,NULL;
TPR-like,NULL; TPR,Tetratricopeptide repeat;
TPR_REGION,Tetratri,CUFF.40699.2
(431 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G58620.1 | Symbols: TTL4 | tetratricopetide-repeat thioredoxi... 277 1e-74
AT2G42580.1 | Symbols: TTL3, VIT | tetratricopetide-repeat thior... 274 8e-74
AT1G53300.1 | Symbols: TTL1 | tetratricopetide-repeat thioredoxi... 258 7e-69
AT3G14950.1 | Symbols: TTL2 | tetratricopetide-repeat thioredoxi... 206 2e-53
AT5G65160.1 | Symbols: TPR14 | tetratricopeptide repeat (TPR)-co... 141 8e-34
AT5G10090.1 | Symbols: TPR13 | Tetratricopeptide repeat (TPR)-li... 130 2e-30
AT1G78120.1 | Symbols: TPR12 | Tetratricopeptide repeat (TPR)-li... 123 2e-28
AT1G56440.1 | Symbols: TPR5 | Tetratricopeptide repeat (TPR)-lik... 55 1e-07
AT1G56440.2 | Symbols: TPR5 | Tetratricopeptide repeat (TPR)-lik... 54 1e-07
>AT3G58620.1 | Symbols: TTL4 | tetratricopetide-repeat
thioredoxin-like 4 | chr3:21680397-21682959 FORWARD
LENGTH=682
Length = 682
Score = 277 bits (708), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 172/439 (39%), Positives = 225/439 (51%), Gaps = 34/439 (7%)
Query: 5 LAHSGRPMNELGLSERLRDSPSCGGDDG--NKPDFRELDLGSPISPLPGRHHRQXXXXXX 62
++H R E ++ + RDS S DD NKPDFRELD GSP+ P R
Sbjct: 1 MSHYRRHSLEPSITSKFRDSLSFQRDDDVINKPDFRELDFGSPLRP------RGSSSAAA 54
Query: 63 XXXXXXXXXXXXXXXXXCRSGHNLVTRRSDSGELS--VQNSPT------RSVKPGHRRSD 114
+ + RRS SGELS Q SP R++KPGHRRS
Sbjct: 55 TPAASGSSSSSSGSASGKPAVTSQFARRSHSGELSGLSQTSPVKPGSVNRNLKPGHRRSA 114
Query: 115 SCSSQPLIYXXXXXXXXXXXXXXXXXXXXXXXXXN--VLPAGNICPSGRVLKPAMVVNRS 172
S + PLIY N VLP GNICPSGR+LK M S
Sbjct: 115 SAGT-PLIYSGLGFSPVNNNNNSSRGGGSGATSPNPGVLPTGNICPSGRILKTGMATRAS 173
Query: 173 SRPDVLGTGTGNYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSVKRVEAEEVKRAGN 232
RP+ L TGT NY + + ++EEVK+AGN
Sbjct: 174 VRPETLCTGTANYGHGNIIRTGGKVSHATKA--------------AAEMSDSEEVKKAGN 219
Query: 233 EEYRRGRFVEALRLYDRAIALSPGNVXXXXXXXXXXXXXXXXXXXVTTCEEALGLDPNYG 292
YR+G + EAL LYDRAI+LSP N V C EA+ DP+Y
Sbjct: 220 VMYRKGNYAEALALYDRAISLSPENPAYRSNRAAALAASGRLEEAVKECLEAVRCDPSYA 279
Query: 293 RAHQRLATIFLRLGHVENARKHLCYHGLQPDPSELQKLQMAEKHIKKCVDVRRIRDWRSV 352
RAHQRLA+++LRLG ENAR+HLC G PD ++LQ+LQ EKH++ C + R+I DWR+V
Sbjct: 280 RAHQRLASLYLRLGEAENARRHLCVSGQCPDQADLQRLQTLEKHLRLCTEARKIGDWRTV 339
Query: 353 MKEVDAAIAAGVDSCAELLMCRAEALLKLHQIDDAESCLSQISKCGPRPTSSSEARFFGM 412
+ E+DAAIA G DS +L+ C+AEA L+LHQI D++ C+S I + T E + FG+
Sbjct: 340 ISEIDAAIANGADSSPQLVACKAEAFLRLHQIKDSDLCISSIPRLDHHHTQPPE-KLFGI 398
Query: 413 LSEAYCFFVRSQIEMALGR 431
+ +AY V++Q++MALGR
Sbjct: 399 VCDAYVLCVQAQVDMALGR 417
>AT2G42580.1 | Symbols: TTL3, VIT | tetratricopetide-repeat
thioredoxin-like 3 | chr2:17728855-17731461 FORWARD
LENGTH=691
Length = 691
Score = 274 bits (701), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 162/412 (39%), Positives = 210/412 (50%), Gaps = 22/412 (5%)
Query: 30 DDGNKPDFRELDLGSPISPLPGRHHRQXXXXXXXXXXXXXXXXXXXXXXXCRSGHNLV-- 87
DD NKPDFRELDLGSP+S L R +
Sbjct: 28 DDVNKPDFRELDLGSPVSTLMPRGSASSSAAATPTSSSGSSGSASGKPSVSSQMAKRLDD 87
Query: 88 TRRSDSGELSVQNS----PTRSVKPGHRRSDSCSSQPLIYXXXXXXXXXXXXX----XXX 139
+S SGELS S TR +KPGHRRS S + PLI+
Sbjct: 88 AYKSHSGELSSPGSGMPTTTRILKPGHRRSSSTGT-PLIFSGSSFTSATSHTSPQGGGSG 146
Query: 140 XXXXXXXXXNVLPAGNICPSGRVLKPAMVVNRSSRPDVLGTGTGNYXXXXXXXXXXXXXX 199
VLPAGNICPSGR+LK M SSR + L TGTGNY
Sbjct: 147 ATSAVSPNTGVLPAGNICPSGRILKTGMASRTSSRTETLCTGTGNYGHGNVVRSGGGGGT 206
Query: 200 XXXXXXXXXXXXXXXXXDSVKRVEAEEVKRAGNEEYRRGRFVEALRLYDRAIALSPGNVX 259
EE+KR GN+ YRRG F EAL LYDRAI +SPGN
Sbjct: 207 SGKAVRVAENGE-----------NPEELKRMGNDMYRRGSFSEALSLYDRAILISPGNAA 255
Query: 260 XXXXXXXXXXXXXXXXXXVTTCEEALGLDPNYGRAHQRLATIFLRLGHVENARKHLCYHG 319
V C EA+ +DP+Y RAHQRLA+++LRLG ENAR+H+C+ G
Sbjct: 256 YRSNRAAALTALRRLGEAVKECLEAVRIDPSYSRAHQRLASLYLRLGEAENARRHICFSG 315
Query: 320 LQPDPSELQKLQMAEKHIKKCVDVRRIRDWRSVMKEVDAAIAAGVDSCAELLMCRAEALL 379
PD ++LQ+LQ EKH+++C + R+I DW++ +KE DAAIA G DS +L+ C+AEA L
Sbjct: 316 QCPDQADLQRLQTLEKHLRRCWEARKIGDWKTAIKETDAAIANGADSSPQLVACKAEAFL 375
Query: 380 KLHQIDDAESCLSQISKCGPRPTSSSEARFFGMLSEAYCFFVRSQIEMALGR 431
+L QI+D++ C+S I + S + + FGM+ EAY +++Q++MALGR
Sbjct: 376 RLKQIEDSDFCVSCIPRLDHHYHSQPQVKLFGMVVEAYVLCIQAQVDMALGR 427
>AT1G53300.1 | Symbols: TTL1 | tetratricopetide-repeat
thioredoxin-like 1 | chr1:19879726-19882375 FORWARD
LENGTH=699
Length = 699
Score = 258 bits (658), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 137/300 (45%), Positives = 171/300 (57%), Gaps = 18/300 (6%)
Query: 149 NVLPAGNICPSGRVLKPAMVVNRSSRPDVLGTGTGNY-----------------XXXXXX 191
NVLP GNICPSG++ M +RS R DVLG+GTG Y
Sbjct: 136 NVLPTGNICPSGKIQITGMTQSRS-RSDVLGSGTGTYGHGSIMRGGGISPAKPTNTGGGS 194
Query: 192 XXXXXXXXXXXXXXXXXXXXXXXXXDSVKRVEAEEVKRAGNEEYRRGRFVEALRLYDRAI 251
++ ++EEVKR GNE YR+G F EAL+LYDRAI
Sbjct: 195 NSPVNVGSSSRSSSTVATGETPIWKKAILGSDSEEVKRVGNEMYRKGLFNEALKLYDRAI 254
Query: 252 ALSPGNVXXXXXXXXXXXXXXXXXXXVTTCEEALGLDPNYGRAHQRLATIFLRLGHVENA 311
ALSP N V CE+A+ DPNYGRAH RLA + +RLG V +A
Sbjct: 255 ALSPTNAAYRSNRAAALIGLSRIGEAVKECEDAVRSDPNYGRAHHRLALLLIRLGQVNSA 314
Query: 312 RKHLCYHGLQPDPSELQKLQMAEKHIKKCVDVRRIRDWRSVMKEVDAAIAAGVDSCAELL 371
RKHLC+ G DP ELQKL+ EKH+ KCVD RR+ DW++V+ E DAAI +G D +L
Sbjct: 315 RKHLCFLGRPSDPMELQKLEAVEKHLIKCVDARRVTDWKTVLIEADAAIVSGADFSPQLF 374
Query: 372 MCRAEALLKLHQIDDAESCLSQISKCGPRPTSSSEARFFGMLSEAYCFFVRSQIEMALGR 431
MC+ EA LKLH++DDA+S L ++ K P P S S+ RF GM EAY +FV++QIEMALGR
Sbjct: 375 MCKVEAFLKLHRLDDAQSKLLEVPKVEPFPVSCSQTRFSGMACEAYIYFVKAQIEMALGR 434
>AT3G14950.1 | Symbols: TTL2 | tetratricopetide-repeat
thioredoxin-like 2 | chr3:5030216-5032892 REVERSE
LENGTH=721
Length = 721
Score = 206 bits (525), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 121/297 (40%), Positives = 158/297 (53%), Gaps = 17/297 (5%)
Query: 150 VLPAGNICPSGRVLKPAMVVNRSSRPDVLGTGTGNYXXXXXXXXXXXXXXXXXXXXXXXX 209
+LPAGN+ PSG+V M + R VLG G +Y
Sbjct: 171 ILPAGNLVPSGKVQITGMTQEKP-RSMVLGPGAKSYGYGSIIRGNNLSPVKPTMMSDSSS 229
Query: 210 XXXXXXXD--------------SVKRVEAEEVKRAGNEEYRRGRFVEALRLYDRAIALSP 255
+ ++ EEVKR GNE +R+G F EAL+LYDRAI LSP
Sbjct: 230 VLPLTLSNNSTGGPDAYTSWKIAIYGSNPEEVKRFGNEMFRKGCFAEALKLYDRAIELSP 289
Query: 256 GNVXXXXXXXXXXXXXXXXXXXVTTCEEALGLDPNYGRAHQRLATIFLRLGHVENARKHL 315
N V CE A+ LDPN+ RAH RLA++ LRLG+V+NA HL
Sbjct: 290 SNATYHSNRAAALSSLGQIGEAVNECEIAIKLDPNFARAHHRLASLLLRLGYVDNAGIHL 349
Query: 316 CYHGLQP-DPSELQKLQMAEKHIKKCVDVRRIRDWRSVMKEVDAAIAAGVDSCAELLMCR 374
Y +P DP+ ++ LQ +KH+ KC RR +W V+ EV AAIA+G DS +L MC+
Sbjct: 350 -YSVEEPLDPTVVKMLQQVDKHLNKCTYARRRGEWSIVLTEVSAAIASGADSSPQLAMCK 408
Query: 375 AEALLKLHQIDDAESCLSQISKCGPRPTSSSEARFFGMLSEAYCFFVRSQIEMALGR 431
AEALLKL ++DDA+ L + K P P S S RFF M++EAY FV+SQ+E+ALGR
Sbjct: 409 AEALLKLLRLDDAQRVLECVPKVEPFPASFSHTRFFDMIAEAYTSFVKSQMELALGR 465
>AT5G65160.1 | Symbols: TPR14 | tetratricopeptide repeat
(TPR)-containing protein | chr5:26031457-26033668
REVERSE LENGTH=593
Length = 593
Score = 141 bits (356), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 114/211 (54%), Gaps = 4/211 (1%)
Query: 221 RVEAEEVKRAGNEEYRRGRFVEALRLYDRAIALSPGNVXXXXXXXXXXXXXXXXXXXVTT 280
R++ E +K GNE+Y+ G F EAL LYD AIA+ P V
Sbjct: 233 RMDPETLKIMGNEDYKNGNFAEALALYDAAIAIDPNKAAYRSNKSAALTALGRILDAVFE 292
Query: 281 CEEALGLDPNYGRAHQRLATIFLRLGHVENARKHLCYHGLQPDPSELQKLQMAEKHIKKC 340
C EA+ ++P+Y RAH RL ++LRLG VE + H + G + D ++ K + + H+ KC
Sbjct: 293 CREAIRIEPHYHRAHHRLGNLYLRLGEVEKSIYHFKHSGPEADREDIAKAKTVQTHLNKC 352
Query: 341 VDVRRIRDWRSVMKEVDAAIAAGVDSCAELLMCRAEALLKLHQIDDAESCLSQISKCGPR 400
+ +R+RDW ++ E I++G D+ ++ +AEALLK H+ +A+ L S+C P
Sbjct: 353 TEAKRLRDWNGLITETTNTISSGADAAPQVYALQAEALLKTHRHQEADDAL---SRC-PV 408
Query: 401 PTSSSEARFFGMLSEAYCFFVRSQIEMALGR 431
+ R++G + A VR+Q+ +A GR
Sbjct: 409 FDIDASTRYYGPVGYAGFLVVRAQVHLASGR 439
>AT5G10090.1 | Symbols: TPR13 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:3153722-3155745 REVERSE
LENGTH=594
Length = 594
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 115/211 (54%), Gaps = 4/211 (1%)
Query: 221 RVEAEEVKRAGNEEYRRGRFVEALRLYDRAIALSPGNVXXXXXXXXXXXXXXXXXXXVTT 280
R++ E +K GNE+Y+ G F EAL LY+ AI++ P V
Sbjct: 234 RMDPETLKIMGNEDYKNGNFAEALALYEAAISIDPKKASYRSNKSAALTALGRILEAVFE 293
Query: 281 CEEALGLDPNYGRAHQRLATIFLRLGHVENARKHLCYHGLQPDPSELQKLQMAEKHIKKC 340
C EA+ +DP+Y RAH RLA ++LRLG VEN+ H + G + D ++ K +M + H+ KC
Sbjct: 294 CREAIRIDPHYHRAHHRLANLYLRLGEVENSIYHFKHAGPEADQEDISKAKMVQTHLNKC 353
Query: 341 VDVRRIRDWRSVMKEVDAAIAAGVDSCAELLMCRAEALLKLHQIDDAESCLSQISKCGPR 400
+ +R+RDW +++KE + I G D+ ++ +AEA LK ++ +A+ L S+C P
Sbjct: 354 TEAKRLRDWNTLIKETENTITTGADAAPQVYALQAEAFLKTYRHQEADDAL---SRC-PV 409
Query: 401 PTSSSEARFFGMLSEAYCFFVRSQIEMALGR 431
+++G + A V +Q+ MA GR
Sbjct: 410 FDGEMSTKYYGSIGYAGFLVVWAQVHMASGR 440
>AT1G78120.1 | Symbols: TPR12 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:29394021-29396003 REVERSE
LENGTH=530
Length = 530
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 111/211 (52%), Gaps = 3/211 (1%)
Query: 221 RVEAEEVKRAGNEEYRRGRFVEALRLYDRAIALSPGNVXXXXXXXXXXXXXXXXXXXVTT 280
R++ E +K+ GNEEY RGRF +AL Y+RAI+ P
Sbjct: 156 RLDPETLKKMGNEEYCRGRFGQALVFYERAISADPKTPTYWSNKSAALISLGRLLEASDA 215
Query: 281 CEEALGLDPNYGRAHQRLATIFLRLGHVENARKHLCYHGLQPDPSELQKLQMAEKHIKKC 340
CEEAL L+P Y RAHQRLA++ LRLG VE A H G + +++++ K +++C
Sbjct: 216 CEEALRLNPTYERAHQRLASLQLRLGEVEKALCHYNEAGKYTETKHIEQVEDVVKCLRRC 275
Query: 341 VDVRRIRDWRSVMKEVDAAIAAGVDSCAELLMCRAEALLKLHQIDDAESCLSQISKCGPR 400
+ RR ++W +KE AI+ G DS + + EALL L + ++A S + +K R
Sbjct: 276 DEARRSKEWNVALKETLFAISYGADSSPRVYALQTEALLHLQRHEEAYSVYQKGTK---R 332
Query: 401 PTSSSEARFFGMLSEAYCFFVRSQIEMALGR 431
S + FG+ +Y V +Q+ +A+GR
Sbjct: 333 FDIDSFIKIFGLSLTSYLLMVGAQVYIAVGR 363
>AT1G56440.1 | Symbols: TPR5 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:21138765-21141482 REVERSE
LENGTH=476
Length = 476
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
Query: 228 KRAGNEEYRRGRFVEALRLYDRAIALSPGNVXXXXXXXXXXXXXXXXXXXVTTCEEALGL 287
K GNE +++ +F EA+ Y R+IALSP V V C EAL L
Sbjct: 88 KEQGNEFFKQKKFNEAIDCYSRSIALSPNAVTYANRAMAYLKIKRYREAEV-DCTEALNL 146
Query: 288 DPNYGRAHQRLATIFLRLGHVENARKHLCYH-GLQPDPSELQK 329
D Y +A+ R AT LG ++ A++ + L+P+ EL+K
Sbjct: 147 DDRYIKAYSRRATARKELGMIKEAKEDAEFALRLEPESQELKK 189
>AT1G56440.2 | Symbols: TPR5 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:21138765-21141482 REVERSE
LENGTH=494
Length = 494
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
Query: 228 KRAGNEEYRRGRFVEALRLYDRAIALSPGNVXXXXXXXXXXXXXXXXXXXVTTCEEALGL 287
K GNE +++ +F EA+ Y R+IALSP V V C EAL L
Sbjct: 88 KEQGNEFFKQKKFNEAIDCYSRSIALSPNAVTYANRAMAYLKIKRYREAEV-DCTEALNL 146
Query: 288 DPNYGRAHQRLATIFLRLGHVENARKHLCYH-GLQPDPSELQK 329
D Y +A+ R AT LG ++ A++ + L+P+ EL+K
Sbjct: 147 DDRYIKAYSRRATARKELGMIKEAKEDAEFALRLEPESQELKK 189