Miyakogusa Predicted Gene

Lj3g3v0427330.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0427330.1 tr|F2CWA5|F2CWA5_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2
SV=1,30.14,1e-17,seg,NULL,CUFF.40695.1
         (400 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G78810.1 | Symbols:  | unknown protein; Has 75 Blast hits to ...   102   6e-22
AT1G78810.2 | Symbols:  | unknown protein; Has 35333 Blast hits ...   102   7e-22

>AT1G78810.1 | Symbols:  | unknown protein; Has 75 Blast hits to 52
           proteins in 16 species: Archae - 0; Bacteria - 0;
           Metazoa - 4; Fungi - 2; Plants - 66; Viruses - 0; Other
           Eukaryotes - 3 (source: NCBI BLink). |
           chr1:29628538-29630510 REVERSE LENGTH=481
          Length = 481

 Score =  102 bits (253), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 63/180 (35%), Positives = 86/180 (47%), Gaps = 21/180 (11%)

Query: 102 PDPGPEWPCPASPDPKPT-TGWGSSKPHSDPPPAVSPEEKERLAALQAQHKACKVFREFL 160
           PD G EWP    P P  T +GW   +P     P +S EEKE+LAA   Q    +  REF 
Sbjct: 89  PDSGREWPVNDVPQPPSTGSGWPEYRPCKKTRP-ISAEEKEKLAANMLQRDIHRTCREFF 147

Query: 161 CASXXXXXXXXX-----------------XXXXXXXXXXXFVG-VFMEDDELRRYYQKYF 202
                                                   F+  VF E+ +L+ YY+K  
Sbjct: 148 GRKSGEEDSSVAGGDESEIDEGDEDQSLEKEESSSSKEFQFLSRVFEENVKLKEYYEKNT 207

Query: 203 ENGDFSCLVCGAVGKKNSGKKFKDCVGLVQHSMSVLRGVRRRAHRAFGQAVCKVLGWDID 262
            NG+F CLVCG +G+K S +KFK C+ L+QHS+++ +   +  HRA  Q VC VLGWD++
Sbjct: 208 GNGEFWCLVCGGIGEK-SCRKFKSCLALIQHSLTIHKTDLKIQHRALAQVVCNVLGWDVN 266



 Score = 95.5 bits (236), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 99/222 (44%), Gaps = 19/222 (8%)

Query: 109 PCPASPDPKPTTGWGSSKPHSDPP------PAVSPEEKERLAALQAQHKACKVFREFLC- 161
           P  +S     T   G+S+P SD          +S EE  + A LQ Q  A +  ++    
Sbjct: 268 PVVSSQKDSQTVVEGASEPPSDSKIPQEKQQVMSVEEHAKAAVLQMQQNASEALKDIFVK 327

Query: 162 -ASXXXXXXXXXXXXXXXXXXXXFVGVFMEDDELRRYYQKYFENGDFSCLVCGAVGKKNS 220
             +                       VF E+ EL+ YY+K +E G F CLVC A   K  
Sbjct: 328 DGTGAADGTEENGDENLSEELELISKVFSENVELKSYYEKNYEGGAFICLVCCAATDKKM 387

Query: 221 GKKFKDCVGLVQHSMSVLRGVRRRAHRAFGQAVCKVLGWDIDRLPTIVMKGEPLGCSAQA 280
            K+FK C G+VQH   V + ++ RAH+ F Q VC++LGWD + LP  VMKG      + A
Sbjct: 388 LKRFKHCYGVVQHCTKVPK-MKIRAHKVFAQFVCELLGWDFELLPRRVMKGVASLAISNA 446

Query: 281 ESEPKENVAADDDRQGGSDKSDDEVVPLEHGDEPDEEHAQGC 322
            +E  EN ++  +     DK+         G+  D   A+ C
Sbjct: 447 -NENNENTSSMVEEHMCEDKA---------GNPQDNNEAEAC 478


>AT1G78810.2 | Symbols:  | unknown protein; Has 35333 Blast hits to
           34131 proteins in 2444 species: Archae - 798; Bacteria -
           22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
           - 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
           chr1:29628688-29630510 REVERSE LENGTH=480
          Length = 480

 Score =  102 bits (253), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 63/180 (35%), Positives = 86/180 (47%), Gaps = 21/180 (11%)

Query: 102 PDPGPEWPCPASPDPKPT-TGWGSSKPHSDPPPAVSPEEKERLAALQAQHKACKVFREFL 160
           PD G EWP    P P  T +GW   +P     P +S EEKE+LAA   Q    +  REF 
Sbjct: 89  PDSGREWPVNDVPQPPSTGSGWPEYRPCKKTRP-ISAEEKEKLAANMLQRDIHRTCREFF 147

Query: 161 CASXXXXXXXXX-----------------XXXXXXXXXXXFVG-VFMEDDELRRYYQKYF 202
                                                   F+  VF E+ +L+ YY+K  
Sbjct: 148 GRKSGEEDSSVAGGDESEIDEGDEDQSLEKEESSSSKEFQFLSRVFEENVKLKEYYEKNT 207

Query: 203 ENGDFSCLVCGAVGKKNSGKKFKDCVGLVQHSMSVLRGVRRRAHRAFGQAVCKVLGWDID 262
            NG+F CLVCG +G+K S +KFK C+ L+QHS+++ +   +  HRA  Q VC VLGWD++
Sbjct: 208 GNGEFWCLVCGGIGEK-SCRKFKSCLALIQHSLTIHKTDLKIQHRALAQVVCNVLGWDVN 266



 Score = 95.1 bits (235), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 99/222 (44%), Gaps = 19/222 (8%)

Query: 109 PCPASPDPKPTTGWGSSKPHSDPP------PAVSPEEKERLAALQAQHKACKVFREFLC- 161
           P  +S     T   G+S+P SD          +S EE  + A LQ Q  A +  ++    
Sbjct: 268 PVVSSQKDSQTVVEGASEPPSDSKIPQEKQQVMSVEEHAKAAVLQMQQNASEALKDIFVK 327

Query: 162 -ASXXXXXXXXXXXXXXXXXXXXFVGVFMEDDELRRYYQKYFENGDFSCLVCGAVGKKNS 220
             +                       VF E+ EL+ YY+K +E G F CLVC A   K  
Sbjct: 328 DGTGAADGTEENGDENLSEELELISKVFSENVELKSYYEKNYEGGAFICLVCCAATDKKM 387

Query: 221 GKKFKDCVGLVQHSMSVLRGVRRRAHRAFGQAVCKVLGWDIDRLPTIVMKGEPLGCSAQA 280
            K+FK C G+VQH   V + ++ RAH+ F Q VC++LGWD + LP  VMKG      + A
Sbjct: 388 LKRFKHCYGVVQHCTKVPK-MKIRAHKVFAQFVCELLGWDFELLPRRVMKGVASLAISNA 446

Query: 281 ESEPKENVAADDDRQGGSDKSDDEVVPLEHGDEPDEEHAQGC 322
            +E  EN ++  +     DK+         G+  D   A+ C
Sbjct: 447 -NENNENTSSMVEEHMCEDKA---------GNPQDNNEAEAC 478