Miyakogusa Predicted Gene

Lj3g3v0424250.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0424250.1 CUFF.40687.1
         (226 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G31080.1 | Symbols:  | F-box family protein | chr1:11091832-1...    51   6e-07
AT5G49610.1 | Symbols:  | F-box family protein | chr5:20131448-2...    49   3e-06

>AT1G31080.1 | Symbols:  | F-box family protein |
          chr1:11091832-11092899 FORWARD LENGTH=355
          Length = 355

 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 9  PSELVIEILSWLPVLSLIRFKCVCKSWKSLISHNKAFAKLQLERTSLKINHVILTSSDSS 68
          P++L++EILS LP  S  RF+CV K W S++ H+  F +L L R+S +   +I    D  
Sbjct: 11 PNDLILEILSRLPAKSTGRFRCVSKLWGSMLCHS-YFTELFLTRSSARPRLLIGIHQDGD 69

Query: 69 --FIPCSLPRLLEDPSSIM 85
            F  C  P+   D SSI+
Sbjct: 70 RFFFSCPQPQSPYDNSSIV 88


>AT5G49610.1 | Symbols:  | F-box family protein |
          chr5:20131448-20132527 REVERSE LENGTH=359
          Length = 359

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 2/66 (3%)

Query: 7  VFPSELVIEILSWLPVLSLIRFKCVCKSWKSLISHNKAFAKLQLERTSLKINHVILTSSD 66
          +FP E++++IL+ LPV SL RFK VCKSW  L S +K F  L   + S+K   ++   SD
Sbjct: 8  LFPDEVILQILARLPVKSLFRFKSVCKSWYRLPS-DKYFTSL-FNQLSVKEQLLVAEVSD 65

Query: 67 SSFIPC 72
          SS + C
Sbjct: 66 SSSLIC 71