Miyakogusa Predicted Gene

Lj3g3v0424220.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0424220.1 Non Chatacterized Hit- tr|I1N057|I1N057_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.44647
PE,34.88,1e-18,seg,NULL,CUFF.40682.1
         (208 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G12870.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   234   3e-62
AT5G56120.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    72   3e-13

>AT3G12870.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT5G56120.1); Has 70 Blast hits to 70 proteins in
           12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr3:4094417-4095037 REVERSE
           LENGTH=206
          Length = 206

 Score =  234 bits (597), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 125/210 (59%), Positives = 149/210 (70%), Gaps = 8/210 (3%)

Query: 1   MANDDADAMTTRTSIMEWKQMHPLHQIAETPTHXXXXXXXXXXXXXIHGRIALKETQIDS 60
           MA+D     +T   IME K  HPLHQIA+TPTH             I  R++ KE+QIDS
Sbjct: 1   MASDQ----STNPPIMEAKTRHPLHQIADTPTHKLLLKQWLKEEELILSRVSHKESQIDS 56

Query: 61  IRKEITMLYIFFFLFHXXXXXXX---XXXXXXXXXXRACHRSWVPSLCSLLFSLGSIWAV 117
           +R+EIT LYIFFFLFH                     AC RSW+PSLC+LL SLG IWAV
Sbjct: 57  VRREITQLYIFFFLFHSISLLLLFHASSSSSSSASSSACKRSWIPSLCALLSSLGIIWAV 116

Query: 118 RYKSDVEAHMEKMLRREKEDKGMLGKCVEELKKKGLEFDLLKEVDALRRAKSLKVVEVKE 177
           RYKS+VE+H+EK+L REKED  +L KCVEELKKKG+EFDLLKEVDALRRAKSL+ VE K 
Sbjct: 117 RYKSEVESHLEKLLEREKEDAKLLRKCVEELKKKGIEFDLLKEVDALRRAKSLR-VESKP 175

Query: 178 VRKWSSRDFVSLFFFSMACLSLAVTRVILC 207
           V+KWS+RDFV+LFFFS++CL LA+ R+ILC
Sbjct: 176 VKKWSARDFVTLFFFSVSCLVLAMIRLILC 205


>AT5G56120.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT3G12870.1); Has 77 Blast hits to 75 proteins in
           12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr5:22721483-22722193 FORWARD
           LENGTH=236
          Length = 236

 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 96/201 (47%), Gaps = 7/201 (3%)

Query: 14  SIMEWKQMHPLHQIAETPTHXXXXXXXXXXXXXIHGRIALKETQIDSIRKEITMLYIFFF 73
            I++  Q HPL +I+E+P H                R+ LKE++++SI++EI  L  FF 
Sbjct: 36  GILKVIQQHPLSEISESPGHLLLLKLWQREEDLFCRRVLLKESRLESIKREIFQLCCFFL 95

Query: 74  LFHXXXXXXXXXX-----XXXXXXXRACHRSWVPSLCSLLFSLGSIWAVRYKSDVEAHME 128
           +FH                        C + W+PS  SL  SL  ++ V+ K  V   + 
Sbjct: 96  VFHGFFFTLVYSSSCSDDADVVKSNAVCKKWWIPSAVSLATSLVLVFLVQAKLFVFWKVY 155

Query: 129 KMLRREKEDKGMLGKCVEELKKKGLEFDLLKEVDALRRAKSLKVVEVK-EVRKWSSRDFV 187
           + + RE+ D   L +CV EL+ KG  FDL KE  + +R KS   VE+K +   W S+  +
Sbjct: 156 RGVNRERNDNRTLTRCVLELRMKGSSFDLSKEPMSGKRMKS-SSVEIKWKPVTWFSQYLI 214

Query: 188 SLFFFSMACLSLAVTRVILCS 208
           ++     A L   V++ ILC 
Sbjct: 215 TIVLLCSAGLFFPVSKFILCG 235