Miyakogusa Predicted Gene
- Lj3g3v0424000.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0424000.1 Non Chatacterized Hit- tr|I1J1V7|I1J1V7_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,35.83,0.00000000000001,seg,NULL,CUFF.40671.1
(230 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G79160.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 174 4e-44
AT1G16500.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 152 1e-37
>AT1G79160.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G16500.1); Has 104 Blast hits to 102 proteins
in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr1:29779862-29780668 REVERSE
LENGTH=239
Length = 239
Score = 174 bits (441), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 110/239 (46%), Positives = 149/239 (62%), Gaps = 31/239 (12%)
Query: 4 EQNQRMMKNESNGEKSKALMTRDLLGGSSIE----SQELDLDMRVPSGWEKRLDLQSGKL 59
+ ++ ++K+ + + S ALMTRDLLG S ELDLD++VP+G+EKRLDL+SGK+
Sbjct: 20 KDDRAVVKDSAGAKSSAALMTRDLLGNGRGGGGDRSLELDLDLQVPTGYEKRLDLKSGKV 79
Query: 60 YIQRHNSLASPVSEHKCQQNQAGPQLKDLKFTPPS-SKIP-LNLFYDTSLDLKLV---SY 114
Y+QR NS +S + Q NQ P +DL F PP+ + P LNLF DT+ +LKL+
Sbjct: 80 YLQRCNSTSSSSITNADQTNQTVPTFQDLNFPPPTLNNSPLLNLFDDTTPELKLLPSSRS 139
Query: 115 SLPLSNNYESVCTLDKVKSALERAEKEPAILRKRAXXXXXXXXXXXXXXXXXXXXIITQE 174
S P ++N +SVCTLDKVKSALERAE++PA+ +KR
Sbjct: 140 SRPNTSNLQSVCTLDKVKSALERAERDPAMFKKRQSPDDTVY------------------ 181
Query: 175 EEECEVKILASPVATGCPGCLTYVLVTKNNPKCPRCNTNVPF---RLMKKPRLDLNLSI 230
+ + +ASPV GCPGCL+YVLV NNPKCPRC+T VP + KKP++DLN+SI
Sbjct: 182 -DHYRTEAVASPVVAGCPGCLSYVLVMMNNPKCPRCDTIVPLPTNPMKKKPKIDLNISI 239
>AT1G16500.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G79160.1); Has 136 Blast hits to 134 proteins
in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 4; Plants - 131; Viruses - 1; Other Eukaryotes -
0 (source: NCBI BLink). | chr1:5639079-5639995 FORWARD
LENGTH=259
Length = 259
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 112/264 (42%), Positives = 145/264 (54%), Gaps = 58/264 (21%)
Query: 5 QNQRMMKNESNGEKSK-ALMTRDLLGGSSI---------ESQELDLDMRVPSGWEKRLDL 54
++ R + +S G +S ALMTRDLLG +S ELDLD++VP+GWEKRLDL
Sbjct: 16 KDDRTVVKDSTGPRSTVALMTRDLLGIGGCVGGGGGGDEQSLELDLDVQVPNGWEKRLDL 75
Query: 55 QSGKLYIQRH-------NSLASPVSEHKCQQNQAGPQLKDLKFTPPSSKIP----LNLF- 102
+SGK+Y+Q+ +S H+ Q NQ P+ +DL P S K P L+LF
Sbjct: 76 KSGKVYLQQQCNSTSSSSSSHHHHHHHEDQTNQTVPRFQDLNVPPISDKFPAKPLLSLFD 135
Query: 103 --YDTSLDLKLVSYSL------PLSN-------NY-ESVCTLDKVKSALERAEKEPAILR 146
DTSL+LKLV S+ PLS+ +Y SVCTLDKVK ALERAEK+ +
Sbjct: 136 DDDDTSLELKLVPSSISRPLPPPLSSFSPNQSLSYLSSVCTLDKVKLALERAEKD---TK 192
Query: 147 KRAXXXXXXXXXXXXXXXXXXXXIITQEEEECEVKILASPVATGCPGCLTYVLVTKNNPK 206
KR + + AS VA GCPGCL+YV V KNNPK
Sbjct: 193 KRQSPEDDGVY-----------------DGTASATVAASQVAAGCPGCLSYVFVAKNNPK 235
Query: 207 CPRCNTNVPFRLMKKPRLDLNLSI 230
CPRC++ VP MKKP++DLN+S+
Sbjct: 236 CPRCHSFVPLPAMKKPKIDLNISM 259